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Package 147/436HostnameOS / ArchBUILDCHECKBUILD BIN
gaga 1.11.0
David Rossell
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/gaga
Last Changed Rev: 50295 / Revision: 53255
Last Changed Date: 2010-10-17 22:57:44 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK [ OK ]

Summary

Package: gaga
Version: 1.11.0
Command: /Users/biocbuild/BBS/utils/build-universal.sh gaga_1.11.0.tar.gz /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R gaga.buildbin-libdir
StartedAt: 2011-02-24 17:18:33 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 17:18:49 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 16.1 seconds
RetCode: 0
Status:  OK 
PackageFile: gaga_1.11.0.tgz
PackageFileSize: 562 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=gaga.buildbin-libdir gaga_1.11.0.tar.gz'
>>>>>>> 

* installing *source* package 'gaga' ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c cseqdesma.c -o cseqdesma.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c cstat.c -o cstat.o
cstat.c: In function 'scanFloat':
cstat.c:494: warning: format not a string literal and no format arguments
cstat.c: In function 'scanDouble':
cstat.c:502: warning: format not a string literal and no format arguments
cstat.c: In function 'fscanDouble':
cstat.c:510: warning: format not a string literal and no format arguments
cstat.c: In function 'scanInt':
cstat.c:520: warning: format not a string literal and no format arguments
cstat.c: In function 'fscanInt':
cstat.c:530: warning: format not a string literal and no format arguments
cstat.c: In function 'scanLong':
cstat.c:541: warning: format not a string literal and no format arguments
cstat.c: In function 'scanArray':
cstat.c:558: warning: format not a string literal and no format arguments
cstat.c: In function 'scanDoubleArray':
cstat.c:570: warning: format not a string literal and no format arguments
cstat.c: In function 'scanDoubleMatrix':
cstat.c:606: warning: format not a string literal and no format arguments
cstat.c: In function 'scanIntArray':
cstat.c:631: warning: format not a string literal and no format arguments
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o gaga.so cseqdesma.o cstat.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/gaga.buildbin-libdir/gaga/libs/i386
*** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c cseqdesma.c -o cseqdesma.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c cstat.c -o cstat.o
cstat.c: In function 'scanFloat':
cstat.c:494: warning: format not a string literal and no format arguments
cstat.c: In function 'scanDouble':
cstat.c:502: warning: format not a string literal and no format arguments
cstat.c: In function 'fscanDouble':
cstat.c:510: warning: format not a string literal and no format arguments
cstat.c: In function 'scanInt':
cstat.c:520: warning: format not a string literal and no format arguments
cstat.c: In function 'fscanInt':
cstat.c:530: warning: format not a string literal and no format arguments
cstat.c: In function 'scanLong':
cstat.c:541: warning: format not a string literal and no format arguments
cstat.c: In function 'scanArray':
cstat.c:558: warning: format not a string literal and no format arguments
cstat.c: In function 'scanDoubleArray':
cstat.c:570: warning: format not a string literal and no format arguments
cstat.c: In function 'scanDoubleMatrix':
cstat.c:606: warning: format not a string literal and no format arguments
cstat.c: In function 'scanIntArray':
cstat.c:631: warning: format not a string literal and no format arguments
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o gaga.so cseqdesma.o cstat.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/gaga.buildbin-libdir/gaga/libs/ppc
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c cseqdesma.c -o cseqdesma.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c cstat.c -o cstat.o
cstat.c: In function 'scanFloat':
cstat.c:494: warning: format not a string literal and no format arguments
cstat.c: In function 'scanDouble':
cstat.c:502: warning: format not a string literal and no format arguments
cstat.c: In function 'fscanDouble':
cstat.c:510: warning: format not a string literal and no format arguments
cstat.c: In function 'scanInt':
cstat.c:520: warning: format not a string literal and no format arguments
cstat.c: In function 'fscanInt':
cstat.c:530: warning: format not a string literal and no format arguments
cstat.c: In function 'scanLong':
cstat.c:541: warning: format not a string literal and no format arguments
cstat.c: In function 'scanArray':
cstat.c:558: warning: format not a string literal and no format arguments
cstat.c: In function 'scanDoubleArray':
cstat.c:570: warning: format not a string literal and no format arguments
cstat.c: In function 'scanDoubleMatrix':
cstat.c:606: warning: format not a string literal and no format arguments
cstat.c: In function 'scanIntArray':
cstat.c:631: warning: format not a string literal and no format arguments
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o gaga.so cseqdesma.o cstat.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/gaga.buildbin-libdir/gaga/libs/x86_64
** R
** inst
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (gaga)


>>>>>>> 
>>>>>>> FIXING LINKS FOR gaga.buildbin-libdir/gaga/libs/i386/gaga.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "gaga.buildbin-libdir/gaga/libs/i386/gaga.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "gaga.buildbin-libdir/gaga/libs/i386/gaga.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "gaga.buildbin-libdir/gaga/libs/i386/gaga.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "gaga.buildbin-libdir/gaga/libs/i386/gaga.so"


>>>>>>> 
>>>>>>> FIXING LINKS FOR gaga.buildbin-libdir/gaga/libs/ppc/gaga.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "gaga.buildbin-libdir/gaga/libs/ppc/gaga.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "gaga.buildbin-libdir/gaga/libs/ppc/gaga.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "gaga.buildbin-libdir/gaga/libs/ppc/gaga.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "gaga.buildbin-libdir/gaga/libs/ppc/gaga.so"


>>>>>>> 
>>>>>>> FIXING LINKS FOR gaga.buildbin-libdir/gaga/libs/x86_64/gaga.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "gaga.buildbin-libdir/gaga/libs/x86_64/gaga.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "gaga.buildbin-libdir/gaga/libs/x86_64/gaga.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "gaga.buildbin-libdir/gaga/libs/x86_64/gaga.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "gaga.buildbin-libdir/gaga/libs/x86_64/gaga.so"