Back to the "Multiple platform build/check report" A  B [C] D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 69/436HostnameOS / ArchBUILDCHECKBUILD BIN
cellHTS2 2.15.4
Florian Hahne
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/cellHTS2
Last Changed Rev: 52661 / Revision: 53255
Last Changed Date: 2011-02-14 09:48:51 -0800 (Mon, 14 Feb 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ WARNINGS ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: cellHTS2
Version: 2.15.4
Command: E:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings cellHTS2_2.15.4.tar.gz
StartedAt: 2011-02-24 17:26:11 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 17:30:11 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 239.9 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: cellHTS2.Rcheck
Warnings: 1

Command output

* using log directory 'E:/biocbld/bbs-2.8-bioc/meat/cellHTS2.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'cellHTS2/DESCRIPTION' ... OK
* this is package 'cellHTS2' version '2.15.4'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'cellHTS2' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'test.R'
 OK
* checking package vignettes in 'inst/doc' ... WARNING
Package vignettes without corresponding PDF:


E:/biocbld/bbs-2.8-bioc/meat/cellHTS2.Rcheck/00_pkg_src/cellHTS2/inst/doc/cellhts2Complete.Rnw
 SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'E:/biocbld/bbs-2.8-bioc/meat/cellHTS2.Rcheck/00check.log'
for details

cellHTS2.Rcheck/00install.out:

* installing *source* package 'cellHTS2' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: akima
Loading required package: lattice
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)
Creating a new generic function for "lines" in "cellHTS2"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (cellHTS2)

cellHTS2.Rcheck/cellHTS2-Ex.timings:

nameusersystemelapsed
Bscore1.870.001.94
ROC-class0.280.000.28
ROC1.250.011.30
annotate0.860.000.85
bdgpbiomart0.430.000.42
buildCellHTS20.250.000.25
cellHTS-class0.980.021.02
configurationAsScreenPlot0.670.000.69
configure0.690.000.69
convertOldCellHTS1.20.01.2
convertWellCoordinates000
data-KcViab0.180.000.17
data-KcViabSmall0.010.000.01
data-dualCh0.020.000.02
data-oldKcViabSmall0.010.000.02
getDynamicRange0.600.000.59
getEnVisionRawData0.010.000.03
getMeasureRepAgreement0.610.010.63
getTopTable1.300.001.29
getZfactor0.400.000.41
imageScreen1.020.001.03
normalizePlates1.520.001.52
oneRowPerId000
plotSpatialEffects1.340.001.34
readHTAnalystData1.170.021.19
readPlateList0.800.010.81
scoreReplicates1.060.001.06
scores2calls1.080.001.14
setSettings000
spatialNormalization1.550.001.58
summarizeChannels1.650.001.67
summarizeReplicates0.970.000.97
templateDescriptionFile000
updateCellHTS0.020.000.02
write.tabdel0.030.000.03
writeReport0.010.000.01
writeTab0.030.000.04