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Package 68/436HostnameOS / ArchBUILDCHECKBUILD BIN
cellHTS 1.21.0
Ligia Bras
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/cellHTS
Last Changed Rev: 52660 / Revision: 53255
Last Changed Date: 2011-02-14 09:47:53 -0800 (Mon, 14 Feb 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: cellHTS
Version: 1.21.0
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch cellHTS_1.21.0.tar.gz
StartedAt: 2011-02-24 18:37:57 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 18:39:35 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 97.7 seconds
RetCode: 0
Status:  OK 
CheckDir: cellHTS.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.8-bioc/meat/cellHTS.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cellHTS/DESCRIPTION’ ... OK
* this is package ‘cellHTS’ version ‘1.21.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘cellHTS’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: oneRowPerId.Rd:19: Dropping empty section \details
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

cellHTS.Rcheck/00install.out:

* installing *source* package ‘cellHTS’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: RColorBrewer
Loading required package: grid
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (cellHTS)

cellHTS.Rcheck/cellHTS-Ex.timings:

nameusersystemelapsed
Bscore0.8710.0130.886
ROC0.0130.0020.015
annotate0.0000.0000.001
bdgpbiomart0.3990.0100.412
configure000
data-KcViab0.3480.0080.356
data-KcViabSmall0.0130.0010.014
getEnVisionRawData0.0970.0030.115
getLibraryPlate0.0190.0010.020
getMatrix0.0130.0010.015
imageScreen0.1200.0060.126
normalizeChannels0.0010.0010.001
normalizePlates0.0320.0030.034
oneRowPerId0.0080.0000.008
plotPlateLibrary1.5970.0181.628
plotSpatialEffects0.7100.0080.727
print.cellHTS0.0170.0010.019
readPlateData0.3550.0140.373
screenMatch0.3760.0110.388
summarizeChannels0.0010.0000.001
summarizeReplicates0.0940.0020.098
write.tabdel0.0320.0030.035
writeReport0.0130.0010.015
writeTab0.0330.0020.036