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Package 259/436HostnameOS / ArchBUILDCHECKBUILD BIN
MEDIPS 1.1.2
Lukas Chavez
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MEDIPS
Last Changed Rev: 50434 / Revision: 53255
Last Changed Date: 2010-10-25 03:13:33 -0700 (Mon, 25 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK [ OK ]
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: MEDIPS
Version: 1.1.2
Command: E:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD INSTALL --build --library=MEDIPS.buildbin-libdir MEDIPS_1.1.2.tar.gz
StartedAt: 2011-02-24 20:37:11 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 20:37:48 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 36.2 seconds
RetCode: 0
Status:  OK  
PackageFile: MEDIPS_1.1.2.zip
PackageFileSize: 12.17 MiB

Command output

* installing *source* package 'MEDIPS' ...
** libs
gcc -I"E:/biocbld/bbs-2.8-bioc/R/include"          -O3 -Wall  -std=gnu99 -c annotate.c -o annotate.o
annotate.c: In function 'annotate':
annotate.c:21:10: warning: suggest parentheses around comparison in operand of '&'
annotate.c:32:4: warning: suggest parentheses around comparison in operand of '&'
annotate.c:43:4: warning: suggest parentheses around comparison in operand of '&'
annotate.c:8:32: warning: unused variable 'rj'
annotate.c:8:17: warning: unused variable 'aj'
gcc -I"E:/biocbld/bbs-2.8-bioc/R/include"          -O3 -Wall  -std=gnu99 -c calibration.c -o calibration.o
calibration.c: In function 'calibration':
calibration.c:10:6: warning: suggest parentheses around comparison in operand of '&'
gcc -I"E:/biocbld/bbs-2.8-bioc/R/include"          -O3 -Wall  -std=gnu99 -c coupling.c -o coupling.o
coupling.c: In function 'coupling':
coupling.c:26:9: warning: statement with no effect
gcc -I"E:/biocbld/bbs-2.8-bioc/R/include"          -O3 -Wall  -std=gnu99 -c profile.c -o profile.o
profile.c: In function 'profile':
profile.c:42:15: warning: unused variable 'wie'
profile.c:221:14: warning: suggest parentheses around comparison in operand of '&'
profile.c:221:14: warning: suggest parentheses around comparison in operand of '&'
profile.c:221:14: warning: suggest parentheses around comparison in operand of '&'
profile.c:221:14: warning: suggest parentheses around comparison in operand of '&'
profile.c:227:20: warning: suggest parentheses around comparison in operand of '&'
profile.c:227:20: warning: suggest parentheses around comparison in operand of '&'
profile.c:227:20: warning: suggest parentheses around comparison in operand of '&'
profile.c:227:20: warning: suggest parentheses around comparison in operand of '&'
profile.c:263:17: warning: suggest parentheses around comparison in operand of '&'
profile.c:263:17: warning: suggest parentheses around comparison in operand of '&'
profile.c:263:17: warning: suggest parentheses around comparison in operand of '&'
profile.c:263:17: warning: suggest parentheses around comparison in operand of '&'
profile.c:269:11: warning: suggest parentheses around comparison in operand of '&'
profile.c:269:11: warning: suggest parentheses around comparison in operand of '&'
profile.c:269:11: warning: suggest parentheses around comparison in operand of '&'
profile.c:269:11: warning: suggest parentheses around comparison in operand of '&'
profile.c:34:9: warning: unused variable 'items'
profile.c:11:22: warning: unused variable 'pvalue'
profile.c:11:18: warning: unused variable 'Val'
profile.c:25:13: warning: 'ptrgenome_raw2' may be used uninitialized in this function
profile.c:25:29: warning: 'ptrgenome_norm2' may be used uninitialized in this function
profile.c:13:96: warning: 'ptr_input' may be used uninitialized in this function
profile.c:11:39: warning: 'Y' may be used uninitialized in this function
profile.c:11:44: warning: 'nY' may be used uninitialized in this function
gcc -I"E:/biocbld/bbs-2.8-bioc/R/include"          -O3 -Wall  -std=gnu99 -c roiprofile.c -o roiprofile.o
roiprofile.c: In function 'calculate':
roiprofile.c:181:6: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:181:6: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:181:6: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:181:6: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:186:11: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:186:11: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:186:11: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:186:11: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:221:7: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:221:7: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:221:7: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:221:7: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:226:11: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:226:11: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:226:11: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:226:11: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:12:18: warning: unused variable 'Val'
roiprofile.c: In function 'roiprofile':
roiprofile.c:280:7: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:282:13: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:294:6: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:296:6: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:248:62: warning: unused variable 'nProtected'
roiprofile.c: In function 'calculate':
roiprofile.c:29:10: warning: 'IN' may be used uninitialized in this function
roiprofile.c:29:21: warning: 'ptrinput' may be used uninitialized in this function
gcc -shared -s -static-libgcc -o MEDIPS.dll tmp.def annotate.o calibration.o coupling.o profile.o roiprofile.o -LE:/biocbld/bbs-2.8-bioc/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.8-bioc/meat/MEDIPS.buildbin-libdir/MEDIPS/libs/i386
** R
** inst
** preparing package for lazy loading
Loading required package: IRanges

Attaching package: 'IRanges'

The following object(s) are masked from 'package:base':

    Map, cbind, eval, intersect, mapply, order, paste, pmax, pmax.int,
    pmin, pmin.int, rbind, rep.int, setdiff, table, union

Loading required package: GenomicRanges
Loading required package: Biostrings
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MEDIPS' as MEDIPS_1.1.2.zip

* DONE (MEDIPS)