Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L [M] N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 254/436HostnameOS / ArchBUILDCHECKBUILD BIN
MBCB 1.5.0
Jeff Allen
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MBCB
Last Changed Rev: 50295 / Revision: 53255
Last Changed Date: 2010-10-17 22:57:44 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: MBCB
Version: 1.5.0
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings MBCB_1.5.0.tar.gz
StartedAt: 2011-02-24 21:10:09 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 21:10:28 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 18.5 seconds
RetCode: 0
Status:  OK 
CheckDir: MBCB.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/MBCB.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MBCB/DESCRIPTION’ ... OK
* this is package ‘MBCB’ version ‘1.5.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘MBCB’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
bg.mcmc: no visible binding for global variable ‘obsbead’
bg.mcmc: no visible binding for global variable ‘obsnc’
esttruesig: no visible binding for global variable ‘obsbead’
esttruesig: no visible binding for global variable ‘truesignal’
liksig: no visible binding for global variable ‘obsbead’
liksig.all: no visible binding for global variable ‘obsbead’
liksig.all: no visible binding for global variable ‘obsnc’
liksig.gamnoise: no visible binding for global variable ‘nbead’
liksig.gamnoise: no visible binding for global variable ‘sortedObsbead’
liksigall.gamnoise: no visible binding for global variable ‘obsnc’
mbcb.correct: no visible binding for '<<-' assignment to ‘trialNames’
mbcb.correct: no visible binding for '<<-' assignment to ‘n.array’
mbcb.correct: no visible binding for '<<-' assignment to ‘truesignal’
mbcb.correct: no visible binding for '<<-' assignment to ‘truenoise’
mbcb.correct: no visible binding for '<<-' assignment to ‘obsbead’
mbcb.correct: no visible binding for '<<-' assignment to ‘obsnc’
mbcb.correct: no visible binding for '<<-' assignment to ‘nbead’
mbcb.correct: no visible binding for global variable ‘n.array’
mbcb.correct: no visible binding for global variable ‘mbcbPB’
mbcb.correct: no visible binding for global variable ‘obsbead’
mbcb.correct: no visible binding for '<<-' assignment to ‘nnc’
mbcb.correct: no visible binding for '<<-' assignment to
  ‘sortedObsbead’
mbcb.correct: no visible binding for global variable ‘obsnc’
mbcb.correct: no visible binding for global variable ‘nbead’
mbcb.correct: no visible binding for global variable ‘nnc’
mbcb.correct: no visible binding for global variable ‘sortedObsbead’
mbcb.gui : actions.norm: no visible binding for global variable
  ‘main.nb’
mbcb.gui : normalizeData: no visible binding for global variable
  ‘main.nb’
mbcb.gui : exportData: no visible binding for global variable ‘main.nb’
mbcb.gui : exportData : <anonymous>: no visible binding for global
  variable ‘outFile’
mbcb.gui : exportData : setOut: no visible binding for '<<-' assignment
  to ‘outFile’
mbcb.gui : exportData : setOut: no visible binding for global variable
  ‘outFile’
mbcb.gui : exportData : eval: no visible binding for '<<-' assignment
  to ‘mbcbPB’
mbcb.gui : removeItem: no visible binding for global variable
  ‘importTab.f.dataList’
mbcb.gui: no visible binding for '<<-' assignment to ‘main.nb’
mbcb.gui: no visible binding for global variable ‘main.nb’
mbcb.main: no visible binding for global variable ‘n.array’
mbcb.main: no visible binding for '<<-' assignment to ‘bgCorrSig’
mbcb.main: no visible binding for global variable ‘bgCorrSig’
mbcb.parseFile: no visible binding for global variable ‘mbcbPB’
mbcb.parseFile: no visible binding for '<<-' assignment to ‘types’
mbcb.parseFile: no visible binding for global variable ‘types’
mbcb.parseFile: no visible binding for '<<-' assignment to ‘sig2’
mbcb.parseFile: no visible binding for global variable ‘sig2’
printMBCBOutput: no visible binding for '<<-' assignment to ‘dete’
printMBCBOutput: no visible binding for global variable ‘mbcbPB’
printMBCBOutput: no visible binding for global variable ‘trialNames’
truesig: no visible binding for global variable ‘obsbead’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

MBCB.Rcheck/00install.out:

* installing *source* package ‘MBCB’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading Tcl/Tk interface ... done
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (MBCB)

MBCB.Rcheck/MBCB-Ex.timings:

nameusersystemelapsed
bg.mcmc1.0640.0161.079
bg.rma0.1640.0080.172
mbcb.correct0.0560.0120.068
mbcb.gui0.0840.0280.174
mbcb.main0.0320.0000.033
mbcb.parseFile0.0320.0000.032