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Package 216/436HostnameOS / ArchBUILDCHECKBUILD BIN
IPPD 0.99.1
Martin Slawski
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/IPPD
Last Changed Rev: 51893 / Revision: 53255
Last Changed Date: 2011-01-13 01:45:00 -0800 (Thu, 13 Jan 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: IPPD
Version: 0.99.1
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch IPPD_0.99.1.tar.gz
StartedAt: 2011-02-24 19:51:07 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 19:53:45 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 157.3 seconds
RetCode: 0
Status:  OK 
CheckDir: IPPD.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.8-bioc/meat/IPPD.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘IPPD/DESCRIPTION’ ... OK
* this is package ‘IPPD’ version ‘0.99.1’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘IPPD’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getpeakheights: no visible binding for global variable ‘tableaveragine’
threshold,peaklist: no visible binding for global variable ‘peaklist’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

IPPD.Rcheck/00install.out:

* installing *source* package ‘IPPD’ ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c R_init_IPPD.c -o R_init_IPPD.o
R_init_IPPD.c:29: warning: missing braces around initializer
R_init_IPPD.c:29: warning: (near initialization for ‘cmethods[10]’)
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o IPPD.so R_init_IPPD.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/IPPD.Rcheck/IPPD/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Loading required package: lattice

Attaching package: 'Matrix'

The following object(s) are masked from 'package:base':

    det

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (IPPD)

IPPD.Rcheck/IPPD-Ex.timings:

nameusersystemelapsed
fitModelParameters5.1120.3975.602
getPeaklist66.603 9.55777.222
myo5000.0980.0040.103
toyspectrum0.2170.0170.236