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Package 206/436HostnameOS / ArchBUILDCHECKBUILD BIN
HTqPCR 1.5.3
Heidi Dvinge
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/HTqPCR
Last Changed Rev: 52078 / Revision: 53255
Last Changed Date: 2011-01-26 08:35:09 -0800 (Wed, 26 Jan 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK [ OK ] OK 

Summary

Package: HTqPCR
Version: 1.5.3
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch HTqPCR_1.5.3.tar.gz
StartedAt: 2011-02-24 15:57:46 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 15:58:52 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 66.1 seconds
RetCode: 0
Status:  OK 
CheckDir: HTqPCR.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/HTqPCR.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'HTqPCR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'HTqPCR' version '1.5.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'HTqPCR' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

HTqPCR.Rcheck/00install.out:

* installing *source* package 'HTqPCR' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "summary" in "HTqPCR"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (HTqPCR)

HTqPCR.Rcheck/HTqPCR-Ex.timings:

nameusersystemelapsed
HTqPCR-package3.1920.0323.225
cbind0.0240.0010.025
changeCtLayout0.0300.0010.030
clusterCt0.5480.0080.557
filterCategory0.0990.0010.099
filterCtData0.2570.0020.259
heatmapSig1.7260.0111.736
limmaCtData0.9500.0050.956
mannwhitneyCtData1.5490.0021.550
normalizeCtData0.4420.0050.449
plotCVBoxes0.1740.0000.175
plotCtArray0.1530.0020.154
plotCtBoxes0.0540.0010.055
plotCtCard0.0520.0010.053
plotCtCategory2.4040.0212.426
plotCtCor0.0500.0000.052
plotCtDensity0.0360.0010.037
plotCtHeatmap3.2710.0313.301
plotCtHistogram0.0110.0010.011
plotCtOverview0.1160.0010.118
plotCtPCA0.0440.0000.045
plotCtPairs0.7300.0020.732
plotCtRQ0.4160.0020.416
plotCtReps0.1540.0010.155
plotCtScatter0.0250.0010.026
plotCtSignificance0.4510.0080.460
plotCtVariation0.7920.0030.795
plotGenes0.0270.0010.028
qPCRpros0.0050.0010.006
qPCRraw0.0070.0000.008
qPCRset-class0.0290.0010.030
readCtData0.0810.0020.083
setCategory4.6260.0904.717
ttestCtData1.1280.0021.131