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Package 206/436HostnameOS / ArchBUILDCHECKBUILD BIN
HTqPCR 1.5.3
Heidi Dvinge
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/HTqPCR
Last Changed Rev: 52078 / Revision: 53255
Last Changed Date: 2011-01-26 08:35:09 -0800 (Wed, 26 Jan 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: HTqPCR
Version: 1.5.3
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings HTqPCR_1.5.3.tar.gz
StartedAt: 2011-02-24 20:17:36 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 20:18:41 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 64.9 seconds
RetCode: 0
Status:  OK 
CheckDir: HTqPCR.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/HTqPCR.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HTqPCR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HTqPCR’ version ‘1.5.3’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘HTqPCR’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

HTqPCR.Rcheck/00install.out:

* installing *source* package ‘HTqPCR’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "summary" in "HTqPCR"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (HTqPCR)

HTqPCR.Rcheck/HTqPCR-Ex.timings:

nameusersystemelapsed
HTqPCR-package3.6560.0203.730
cbind0.0280.0000.028
changeCtLayout0.0280.0000.030
clusterCt0.7240.0120.740
filterCategory0.0880.0080.096
filterCtData0.2000.0000.201
heatmapSig1.6160.0041.637
limmaCtData0.9120.0040.918
mannwhitneyCtData1.4360.0161.471
normalizeCtData0.4240.0000.434
plotCVBoxes0.1760.0040.181
plotCtArray0.220.000.22
plotCtBoxes0.0440.0000.046
plotCtCard0.0480.0040.050
plotCtCategory3.2280.0403.289
plotCtCor0.0440.0040.049
plotCtDensity0.0320.0040.034
plotCtHeatmap2.9810.0243.015
plotCtHistogram0.0120.0000.011
plotCtOverview0.1200.0040.122
plotCtPCA0.0440.0000.043
plotCtPairs0.6800.0040.687
plotCtRQ0.3800.0040.383
plotCtReps0.1360.0000.135
plotCtScatter0.0240.0000.024
plotCtSignificance0.4240.0120.441
plotCtVariation0.7000.0040.710
plotGenes0.0280.0000.028
qPCRpros0.0000.0040.004
qPCRraw0.0040.0000.004
qPCRset-class0.0240.0000.026
readCtData0.0520.0000.053
setCategory5.1400.0125.168
ttestCtData1.0280.0001.027