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Package 161/436HostnameOS / ArchBUILDCHECKBUILD BIN
GeneRegionScan 1.7.1
Lasse Folkersen
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GeneRegionScan
Last Changed Rev: 50725 / Revision: 53255
Last Changed Date: 2010-11-06 14:29:12 -0700 (Sat, 06 Nov 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: GeneRegionScan
Version: 1.7.1
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings GeneRegionScan_1.7.1.tar.gz
StartedAt: 2011-02-24 19:46:39 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 19:51:20 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 281.2 seconds
RetCode: 0
Status:  OK 
CheckDir: GeneRegionScan.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/GeneRegionScan.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GeneRegionScan/DESCRIPTION’ ... OK
* this is package ‘GeneRegionScan’ version ‘1.7.1’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘GeneRegionScan’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

GeneRegionScan.Rcheck/00install.out:

* installing *source* package ‘GeneRegionScan’ ...
** R
** data
** exec
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: IRanges

Attaching package: 'IRanges'

The following object(s) are masked from 'package:Biobase':

    updateObject

The following object(s) are masked from 'package:base':

    Map, cbind, eval, intersect, mapply, order, paste, pmax, pmax.int,
    pmin, pmin.int, rbind, rep.int, setdiff, table, union

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (GeneRegionScan)

GeneRegionScan.Rcheck/GeneRegionScan-Ex.timings:

nameusersystemelapsed
addSnpPdata000
checkForFileInPath0.0480.0120.094
doProbeLinear3.1160.0163.154
doProbeTTest0.5680.0040.586
exampleProbeLevelSet0.0400.0040.043
excludeDoubleMatchingProbes000
exonStructure11.565 0.02411.700
findSequenceInGenome000
geneRegionScan79.05713.20092.911
getLocalMetaprobeIntensities000
getLocalProbeIntensities000
getMetaprobesetsFromRegionOfInterest000
getProbeLevelAnnotationForExonArrays000
getProbesetsFromMetaprobeset000
getProbesetsFromRegionOfInterest000
getSequence0.0280.0080.033
getServerProbeIntensities000
plotCoexpression58.17111.87770.329
plotOnGene18.317 0.14419.146
readGeneInput000
translateSampleNames0.0720.0000.075