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Package 77/436HostnameOS / ArchBUILDCHECKBUILD BIN
ChemmineR 2.1.6
ChemmineR Team
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ChemmineR
Last Changed Rev: 53052 / Revision: 53255
Last Changed Date: 2011-02-22 07:07:14 -0800 (Tue, 22 Feb 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: ChemmineR
Version: 2.1.6
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch ChemmineR_2.1.6.tar.gz
StartedAt: 2011-02-24 18:42:07 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 18:47:25 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 318.3 seconds
RetCode: 0
Status:  OK 
CheckDir: ChemmineR.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.8-bioc/meat/ChemmineR.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ChemmineR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ChemmineR’ version ‘2.1.6’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘ChemmineR’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.data.frame.to.str: no visible binding for global variable ‘string’
.gen_atom_pair: no visible global function definition for
  ‘Descriptors_get_len’
.gen_atom_pair: no visible global function definition for
  ‘Descriptors_get_descriptor’
.parse: no visible global function definition for ‘Descriptors’
.parse: no visible global function definition for
  ‘Descriptors_parse_sdf’
cmp.parse: no visible global function definition for ‘batch_parse’
cmp.parse1: no visible global function definition for
  ‘delete_Descriptors’
datablock2ma: no visible binding for global variable ‘sdfset’
sdf_to_desc: no visible global function definition for
  ‘delete_Descriptors’
sdfs_to_desc: no visible global function definition for ‘batch_parse’
validSDF: no visible binding for global variable ‘sdfset’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

ChemmineR.Rcheck/00install.out:

* installing *source* package ‘ChemmineR’ ...
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for "plot" in "ChemmineR"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (ChemmineR)

ChemmineR.Rcheck/ChemmineR-Ex.timings:

nameusersystemelapsed
AP-class29.156 0.19129.606
APset-class28.801 0.17129.111
SDF-class0.1480.0100.161
SDF2apcmp0.0520.0020.054
SDFset-class1.1540.0441.203
SDFset2SDF0.3710.0120.384
SDFset2list0.1660.0480.215
SDFstr-class0.6290.0060.637
ap28.376 0.07828.585
apset2descdb28.799 0.16229.171
atomblock0.4160.0240.441
atomcount0.6430.0060.651
atomprop0.0070.0000.008
bondblock0.3950.0160.412
cid3.3900.0113.421
cluster.sizestat9.0790.0389.624
cluster.visualize9.3180.0389.750
cmp.cluster12.491 0.06712.914
cmp.duplicated7.9720.0308.396
cmp.parse7.9790.0298.350
cmp.parse10.0000.0000.001
cmp.search9.4260.0489.891
cmp.similarity8.0640.0348.557
datablock0.9900.0151.013
datablock2ma0.1030.0030.106
db.explain7.9700.0278.329
db.subset7.9430.0208.293
grepSDFset0.1160.0020.118
header0.4050.0050.413
makeUnique0.0650.0010.066
plotStruc0.4540.0070.463
read.SDFset1.3140.0041.319
read.SDFstr1.9300.0051.938
sdf.subset8.1770.0298.739
sdf.visualize 7.934 0.04611.696
sdf2ap28.785 0.18829.182
sdf2list0.0740.0150.089
sdf2str0.0920.0060.099
sdfid0.1200.0020.123
sdfsample0.1480.0050.158
sdfstr2list3.2740.5233.817
validSDF0.1280.0020.130
view5.7330.0165.783
write.SDF0.6710.0070.679