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Package 72/436HostnameOS / ArchBUILDCHECKBUILD BIN
CGHcall 2.11.0
Mark van de Wiel
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CGHcall
Last Changed Rev: 50725 / Revision: 53255
Last Changed Date: 2010-11-06 14:29:12 -0700 (Sat, 06 Nov 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: CGHcall
Version: 2.11.0
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings CGHcall_2.11.0.tar.gz
StartedAt: 2011-02-24 18:40:20 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 18:41:04 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 43.8 seconds
RetCode: 0
Status:  OK 
CheckDir: CGHcall.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/CGHcall.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CGHcall/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘CGHcall’ version ‘2.11.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘CGHcall’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

CGHcall.Rcheck/00install.out:

* installing *source* package ‘CGHcall’ ...
** R
** data
** inst
** preparing package for lazy loading

**************************************************************************
   The plan to change the data format for CNA object has been postponed   
 in order to ensure backward compatibility with older versions of DNAcopy 
**************************************************************************


Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: marray
Loading required package: limma
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (CGHcall)

CGHcall.Rcheck/CGHcall-Ex.timings:

nameusersystemelapsed
CGHcall1.1760.0281.216
ExpandCGHcall0.9720.0000.975
class.cghCall0.0720.0000.072
class.cghRaw0.4000.0240.425
class.cghSeg0.0720.0000.074
make_cghRaw0.1200.0040.121
normalize1.0280.0001.050
plot.summary000
postsegnormalize1.0000.0041.006
preprocess0.0640.0040.069
segmentData0.0120.0040.029