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ind1KG 0.1.5
VJ Carey
Snapshot Date: 2011-04-06 12:27:26 -0700 (Wed, 06 Apr 2011)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/ind1KG
Last Changed Rev: 1348 / Revision: 1510
Last Changed Date: 2010-10-13 19:41:41 -0700 (Wed, 13 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64 [ ERROR ] skipped  skipped 
petty Mac OS X Snow Leopard (10.6.6) / i386  OK  OK  OK 

Summary

Package: ind1KG
Version: 0.1.5
Command: chmod a+r ind1KG -R && D:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD build --keep-empty-dirs ind1KG
StartedAt: 2011-04-06 15:19:32 -0700 (Wed, 06 Apr 2011)
EndedAt: 2011-04-06 15:24:16 -0700 (Wed, 06 Apr 2011)
EllapsedTime: 284.5 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

Warning: unknown option '--keep-empty-dirs'
* checking for file 'ind1KG/DESCRIPTION' ... OK
* preparing 'ind1KG':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: Rsamtools
Loading required package: IRanges

Attaching package: 'IRanges'

The following object(s) are masked from 'package:base':

    Map, cbind, eval, mapply, order, paste, pmax, pmax.int, pmin,
    pmin.int, rbind, rep.int, table

Loading required package: GenomicRanges
Loading required package: Biostrings
Download the knownGene table ... OK
Download the knownToLocusLink table ... OK
Extract the 'transcripts' data frame ... OK
Extract the 'splicings' data frame ... OK
Download and preprocess the 'chrominfo' data frame ... 
Error: processing vignette 'ind1KG.Rnw' failed with diagnostics:
 chunk 5 (label=lkgf) 
Error in download.file(url, destfile, quiet = TRUE) : 
  cannot open URL 'http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/chromInfo.txt.gz'
In addition: Warning message:
In download.file(url, destfile, quiet = TRUE) :
  unable to connect to 'hgdownload.cse.ucsc.edu' on port 80.
Execution halted