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hgu2beta7 1.2.2
Biocore Team c/o BioC user list
Snapshot Date: 2011-04-06 12:27:26 -0700 (Wed, 06 Apr 2011)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/hgu2beta7
Last Changed Rev: 782 / Revision: 1510
Last Changed Date: 2009-05-08 12:29:52 -0700 (Fri, 08 May 2009)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ WARNINGS ]
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
petty Mac OS X Snow Leopard (10.6.6) / i386  OK  WARNINGS  OK 

Summary

Package: hgu2beta7
Version: 1.2.2
Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings hgu2beta7_1.2.2.tar.gz
StartedAt: 2011-04-06 14:30:11 -0700 (Wed, 06 Apr 2011)
EndedAt: 2011-04-06 14:31:49 -0700 (Wed, 06 Apr 2011)
EllapsedTime: 97.9 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: hgu2beta7.Rcheck
Warnings: 1

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.7-data-experiment/meat/hgu2beta7.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘hgu2beta7/DESCRIPTION’ ... OK
* this is package ‘hgu2beta7’ version ‘1.2.2’
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘hgu2beta7’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory 'data' contains no data sets.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: annotate
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  ‘/loc/home/biocbuild/bbs-2.7-data-experiment/meat/hgu2beta7.Rcheck/00check.log’
for details

hgu2beta7.Rcheck/00install.out:

* installing *source* package ‘hgu2beta7’ ...
** R
** data
**  moving datasets to lazyload DB
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (hgu2beta7)

hgu2beta7.Rcheck/hgu2beta7-Ex.timings:

nameusersystemelapsed
hgu2beta7ACCNUM0.5080.0120.519
hgu2beta7CHR0.3240.0000.324
hgu2beta7CHRLENGTHS000
hgu2beta7CHRLOC0.3320.0040.335
hgu2beta7ENZYME0.3200.0040.324
hgu2beta7ENZYME2PROBE0.0080.0000.006
hgu2beta7GENENAME0.3600.0000.359
hgu2beta7GO2.7320.0442.789
hgu2beta7GO2ALLPROBES0.5720.0040.577
hgu2beta7GO2PROBE0.1000.0000.098
hgu2beta7GRIF0.4280.0040.451
hgu2beta7LOCUSID0.1560.0000.162
hgu2beta7MAP0.1960.0000.198
hgu2beta7OMIM0.1920.0000.193
hgu2beta7ORGANISM0.0000.0000.001
hgu2beta7PATH0.1960.0000.195
hgu2beta7PATH2PROBE0.0040.0000.005
hgu2beta7PMID0.2960.0000.298
hgu2beta7PMID2PROBE1.8680.0001.922
hgu2beta7REFSEQ0.7880.0000.803
hgu2beta7SUMFUNC0.3720.0080.378
hgu2beta7SYMBOL0.6880.0040.692
hgu2beta7UNIGENE0.2920.0000.293