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encoDnaseI 0.1.6
VJ Carey
Snapshot Date: 2011-04-06 12:27:26 -0700 (Wed, 06 Apr 2011)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/encoDnaseI
Last Changed Rev: 1342 / Revision: 1510
Last Changed Date: 2010-10-13 18:21:56 -0700 (Wed, 13 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  ERROR  skipped 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  ERROR  skipped  skipped 
petty Mac OS X Snow Leopard (10.6.6) / i386 [ ERROR ] skipped  skipped 

Summary

Package: encoDnaseI
Version: 0.1.6
Command: /Library/Frameworks/R.framework/Versions/2.12/Resources/bin/R CMD build --keep-empty-dirs encoDnaseI
StartedAt: 2011-04-06 13:55:35 -0700 (Wed, 06 Apr 2011)
EndedAt: 2011-04-06 13:56:19 -0700 (Wed, 06 Apr 2011)
EllapsedTime: 44.1 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

Warning: unknown option '--keep-empty-dirs'
* checking for file 'encoDnaseI/DESCRIPTION' ... OK
* preparing 'encoDnaseI':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: lattice
Loading required package: GGtools
Loading required package: GGBase
Loading required package: snpMatrix
Loading required package: survival
Loading required package: splines
Loading required package: RSQLite
Loading required package: DBI
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: IRanges

Attaching package: 'IRanges'

The following object(s) are masked from 'package:Biobase':

    updateObject

The following object(s) are masked from 'package:base':

    Map, cbind, eval, mapply, order, paste, pmax, pmax.int, pmin,
    pmin.int, rbind, rep.int, table

Loading required package: rtracklayer
Loading required package: RCurl
Loading required package: bitops
Loading required package: org.Hs.eg.db
Loading required package: GenomicRanges
Loading required package: ff
Loading required package: tools
Loading required package: bit
Loading package bit1.1-6

package:bit (c) 2008/2009 Jens Oehlschlaegel (GPL-2)

creators: bit bitwhich

coercion: as.logical as.integer as.bit as.bitwhich which

operator: ! & | xor != == 

querying: print length any all min max range sum summary

bit access: length<- [ [<- [[ [[<-

for more help type ?bit


Attaching package: 'bit'

The following object(s) are masked from 'package:base':

    xor

Loading package ff2.2-1

- getOption("fftempdir")=="/tmp/RtmpWyl9jH"

- getOption("ffextension")=="ff"

- getOption("ffdrop")==TRUE

- getOption("fffinonexit")==TRUE

- getOption("ffpagesize")==65536

- getOption("ffcaching")=="mmnoflush"  -- consider "ffeachflush" if your system stalls on large writes

- getOption("ffbatchbytes")==16777216 -- consider a different value for tuning your system

- getOption("ffmaxbytes")==536870912 -- consider a different value for tuning your system

Attaching package ff


Attaching package: 'ff'

The following object(s) are masked from 'package:utils':

    write.csv, write.csv2

The following object(s) are masked from 'package:base':

    is.factor, is.ordered


Error: processing vignette 'dnaseUse.Rnw' failed with diagnostics:
 chunk 5 (label=dogg) 
Error in library(GGdata) : there is no package called 'GGdata'
In addition: Warning messages:
1: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible 
2: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible 
Execution halted