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Package 239/419HostnameOS / ArchBUILDCHECKBUILD BIN
maigesPack 1.14.0
Gustavo H. Esteves
Snapshot Date: 2011-04-06 23:24:01 -0700 (Wed, 06 Apr 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/maigesPack
Last Changed Rev: 50293 / Revision: 54588
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 

Summary

Package: maigesPack
Version: 1.14.0
Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings maigesPack_1.14.0.tar.gz
StartedAt: 2011-04-07 07:28:27 -0700 (Thu, 07 Apr 2011)
EndedAt: 2011-04-07 07:37:58 -0700 (Thu, 07 Apr 2011)
EllapsedTime: 570.9 seconds
RetCode: 0
Status:  OK 
CheckDir: maigesPack.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/maigesPack.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘maigesPack/DESCRIPTION’ ... OK
* this is package ‘maigesPack’ version ‘1.14.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘maigesPack’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

maigesPack.Rcheck/00install.out:

* installing *source* package ‘maigesPack’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.7-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c Minfo.c -o Minfo.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.7-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c bootstrapT.c -o bootstrapT.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.7-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c register.c -o register.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.7-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c robustCorr.c -o robustCorr.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.7-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c stats.c -o stats.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o maigesPack.so Minfo.o bootstrapT.o register.o robustCorr.o stats.o -L/home/biocbuild/bbs-2.7-bioc/R/lib -lR
installing to /loc/home/biocbuild/bbs-2.7-bioc/meat/maigesPack.Rcheck/maigesPack/libs
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: limma
Loading required package: marray
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (maigesPack)

maigesPack.Rcheck/maigesPack-Ex.timings:

nameusersystemelapsed
MI0.0040.0000.004
activeMod3.4200.0163.436
activeModScoreHTML1.6800.0041.684
activeNet4.9080.0004.907
activeNetScoreHTML4.9170.0004.913
addGeneGrps000
addPaths0.0000.0000.001
bootstrapCor0.0560.0000.055
bootstrapMI0.2800.0000.278
bootstrapT0.0040.0000.003
boxplot-methods180.491 3.996184.531
bracketMethods0.3280.0080.337
calcA0.1320.1360.267
calcW0.1760.1040.279
classifyKNN0.2680.0040.272
classifyKNNsc0.3880.0040.390
classifyLDA1.4160.0041.420
classifyLDAsc2.6320.0002.633
classifySVM0.6600.0000.658
classifySVMsc1.1120.0041.113
coerce-methods0.1440.0200.167
compCorr0.0000.0000.001
createMaigesRaw0.3680.0040.378
deGenes2by2BootT0.5800.0080.588
deGenes2by2Ttest0.3440.0000.346
deGenes2by2Wilcox0.4040.0040.759
deGenesANOVA0.3080.0080.315
designANOVA0.1160.0080.124
dim-methods0.0680.0040.071
getLabels0.0800.0000.081
hierM2.2930.0482.328
hierMde0.5640.0040.567
image-methods4.8560.0124.872
kmeansM2.1520.0082.180
kmeansMde0.4880.0040.493
loadData000
normLoc2.9160.0082.920
normOLIN0.0640.0040.069
normRepLoess0.0680.0000.067
normScaleLimma104.979 4.892109.904
normScaleMarray128.896 0.696129.749
plot-methods10.449 0.05610.625
plotGenePair0.1080.0000.110
print-methods0.1600.0000.163
relNet2TGF0.1640.0000.164
relNetworkB2.9880.0042.993
relNetworkM0.1080.0000.105
robustCorr0.0000.0000.001
selSpots0.6360.0040.638
show-methods0.1560.0040.161
somM2.3040.0082.316
somMde0.6440.0040.648
summarizeReplicates3.2360.0083.243
summary-methods0.1640.0000.164
tableClass1.1520.0041.154
tablesDE2.7040.0202.722