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Package 69/419HostnameOS / ArchBUILDCHECKBUILD BIN
cellHTS2 2.14.0
Florian Hahne
Snapshot Date: 2011-04-06 23:24:01 -0700 (Wed, 06 Apr 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/cellHTS2
Last Changed Rev: 50293 / Revision: 54588
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ WARNINGS ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 

Summary

Package: cellHTS2
Version: 2.14.0
Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings cellHTS2_2.14.0.tar.gz
StartedAt: 2011-04-07 06:22:15 -0700 (Thu, 07 Apr 2011)
EndedAt: 2011-04-07 06:26:52 -0700 (Thu, 07 Apr 2011)
EllapsedTime: 276.5 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: cellHTS2.Rcheck
Warnings: 1

Command output

* using log directory 'E:/biocbld/bbs-2.7-bioc/meat/cellHTS2.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'cellHTS2/DESCRIPTION' ... OK
* this is package 'cellHTS2' version '2.14.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'cellHTS2' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'test.R'
 OK
* checking package vignettes in 'inst/doc' ... WARNING
Package vignettes without corresponding PDF:


E:/biocbld/bbs-2.7-bioc/meat/cellHTS2.Rcheck/00_pkg_src/cellHTS2/inst/doc/cellhts2Complete.Rnw
 SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'E:/biocbld/bbs-2.7-bioc/meat/cellHTS2.Rcheck/00check.log'
for details

cellHTS2.Rcheck/00install.out:

* installing *source* package 'cellHTS2' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: akima
Loading required package: lattice
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.2-01)
Creating a new generic function for "lines" in "cellHTS2"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (cellHTS2)

cellHTS2.Rcheck/cellHTS2-Ex.timings:

nameusersystemelapsed
Bscore2.660.002.66
ROC-class0.280.020.29
ROC1.50.01.5
annotate1.030.001.03
bdgpbiomart0.220.010.24
cellHTS-class1.170.001.17
configurationAsScreenPlot1.380.021.39
configure0.840.000.84
convertOldCellHTS1.310.001.34
convertWellCoordinates000
data-KcViab0.150.000.16
data-KcViabSmall0.020.000.02
data-dualCh0.020.000.01
data-oldKcViabSmall0.010.000.02
getDynamicRange0.750.000.75
getEnVisionRawData0.050.010.06
getMeasureRepAgreement0.810.000.84
getTopTable2.000.022.02
getZfactor0.50.00.5
imageScreen1.330.001.34
normalizePlates1.860.001.96
oneRowPerId0.010.000.01
plotSpatialEffects1.830.001.86
readHTAnalystData1.360.001.36
readPlateList1.030.001.09
scoreReplicates1.330.001.33
scores2calls1.470.001.67
setSettings0.020.000.02
spatialNormalization1.530.001.55
summarizeChannels2.090.002.11
summarizeReplicates1.190.001.20
templateDescriptionFile000
updateCellHTS0.030.000.03
write.tabdel0.110.000.11
writeReport0.010.000.02
writeTab0.090.000.10