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Package 29/419HostnameOS / ArchBUILDCHECKBUILD BIN
aroma.light 1.18.4
Henrik Bengtsson
Snapshot Date: 2011-04-06 23:24:01 -0700 (Wed, 06 Apr 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/aroma.light
Last Changed Rev: 53482 / Revision: 54588
Last Changed Date: 2011-03-07 00:18:55 -0800 (Mon, 07 Mar 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 

Summary

Package: aroma.light
Version: 1.18.4
Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings aroma.light_1.18.4.tar.gz
StartedAt: 2011-04-07 04:41:27 -0700 (Thu, 07 Apr 2011)
EndedAt: 2011-04-07 04:42:40 -0700 (Thu, 07 Apr 2011)
EllapsedTime: 72.6 seconds
RetCode: 0
Status:  OK 
CheckDir: aroma.light.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/aroma.light.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘aroma.light/DESCRIPTION’ ... OK
* this is package ‘aroma.light’ version ‘1.18.4’
* package encoding: latin1
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘aroma.light’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: R.basic
* checking examples ... OK
* checking PDF version of manual ... OK

aroma.light.Rcheck/00install.out:

* installing *source* package ‘aroma.light’ ...
** R
** inst
** preparing package for lazy loading
R.methodsS3 v1.2.1 (2010-09-18) successfully loaded. See ?R.methodsS3 for help.
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (aroma.light)

aroma.light.Rcheck/aroma.light-Ex.timings:

nameusersystemelapsed
backtransformAffine.matrix0.0040.0000.004
backtransformPrincipalCurve.matrix0.8560.0000.858
calibrateMultiscan.matrix000
callNaiveGenotypes.numeric0.5360.0080.542
distanceBetweenLines0.0240.0000.024
findPeaksAndValleys.density0.0560.0000.057
fitPrincipalCurve.matrix0.5480.0080.558
fitXYCurve.matrix0.0640.0000.065
iwpca.matrix0.0200.0000.017
likelihood.smooth.spline0.3800.0040.384
medianPolish.matrix0.0080.0000.008
normalizeAffine.matrix18.077 0.00818.083
normalizeCurveFit.matrix17.905 0.02417.931
normalizeDifferencesToAverage.list0.020.000.02
normalizeFragmentLength0.7560.0040.762
normalizeQuantileRank.list0.1280.0000.127
normalizeQuantileRank.matrix0.10.00.1
normalizeQuantileSpline.matrix2.3840.0042.388
normalizeTumorBoost.numeric0.0960.0040.102
robustSmoothSpline0.0560.0000.092
sampleCorrelations.matrix0.1640.0000.162
sampleTuples0.0000.0000.001
weightedMedian4.5880.0724.659
wpca.matrix0.0760.0000.074