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Package 27/419HostnameOS / ArchBUILDCHECKBUILD BIN
annotationTools 1.22.0
Alexandre Kuhn
Snapshot Date: 2011-04-06 23:24:01 -0700 (Wed, 06 Apr 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/annotationTools
Last Changed Rev: 50293 / Revision: 54588
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 

Summary

Package: annotationTools
Version: 1.22.0
Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings annotationTools_1.22.0.tar.gz
StartedAt: 2011-04-07 05:46:28 -0700 (Thu, 07 Apr 2011)
EndedAt: 2011-04-07 05:47:05 -0700 (Thu, 07 Apr 2011)
EllapsedTime: 36.2 seconds
RetCode: 0
Status:  OK  
CheckDir: annotationTools.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.7-bioc/meat/annotationTools.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'annotationTools/DESCRIPTION' ... OK
* this is package 'annotationTools' version '1.22.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'annotationTools' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: compactList.Rd:22: Dropping empty section \references
prepare_Rd: getANNOTATION.Rd:31: Dropping empty section \references
prepare_Rd: getGENEID.Rd:32: Dropping empty section \references
prepare_Rd: getGENEONTOLOGY.Rd:35: Dropping empty section \references
prepare_Rd: getGENESYMBOL.Rd:32: Dropping empty section \references
prepare_Rd: getGENETITLE.Rd:32: Dropping empty section \references
prepare_Rd: getHOMOLOG.Rd:40: Dropping empty section \references
prepare_Rd: getMULTIANNOTATION.Rd:29: Dropping empty section \references
prepare_Rd: getOrthologousProbesets.Rd:28: Dropping empty section \references
prepare_Rd: getPROBESET.Rd:32: Dropping empty section \references
prepare_Rd: listToCharacterVector.Rd:20: Dropping empty section \references
prepare_Rd: ps2ps.Rd:27: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

annotationTools.Rcheck/00install.out:

* installing *source* package 'annotationTools' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (annotationTools)

annotationTools.Rcheck/annotationTools-Ex.timings:

nameusersystemelapsed
compactList000
getANNOTATION000
getGENEID0.220.000.22
getGENEONTOLOGY0.240.000.23
getGENESYMBOL0.210.000.22
getGENETITLE0.220.000.22
getHOMOLOG0.020.000.01
getMULTIANNOTATION0.010.000.02
getOrthologousProbesets0.070.000.06
getPROBESET0.220.020.24
listToCharacterVector000
ps2ps000