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Package 366/419HostnameOS / ArchBUILDCHECKBUILD BIN
SamSPECTRAL 1.4.1
Habil Zare
Snapshot Date: 2011-04-06 23:24:01 -0700 (Wed, 06 Apr 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/SamSPECTRAL
Last Changed Rev: 50369 / Revision: 54588
Last Changed Date: 2010-10-20 14:36:57 -0700 (Wed, 20 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 

Summary

Package: SamSPECTRAL
Version: 1.4.1
Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings SamSPECTRAL_1.4.1.tar.gz
StartedAt: 2011-04-07 08:56:42 -0700 (Thu, 07 Apr 2011)
EndedAt: 2011-04-07 08:56:55 -0700 (Thu, 07 Apr 2011)
EllapsedTime: 13.5 seconds
RetCode: 0
Status:  OK 
CheckDir: SamSPECTRAL.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/SamSPECTRAL.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SamSPECTRAL/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SamSPECTRAL’ version ‘1.4.1’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘SamSPECTRAL’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

SamSPECTRAL.Rcheck/00install.out:

* installing *source* package ‘SamSPECTRAL’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.7-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c Rinit.c -o Rinit.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.7-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c conductance_computation.c -o conductance_computation.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.7-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c maximum_of_rows.c -o maximum_of_rows.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o SamSPECTRAL.so Rinit.o conductance_computation.o maximum_of_rows.o -L/home/biocbuild/bbs-2.7-bioc/R/lib -lR
installing to /loc/home/biocbuild/bbs-2.7-bioc/meat/SamSPECTRAL.Rcheck/SamSPECTRAL/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (SamSPECTRAL)

SamSPECTRAL.Rcheck/SamSPECTRAL-Ex.timings:

nameusersystemelapsed
Building_Communities0.0000.0000.001
Civilized_Spectral_Clustering000
Conductance_Calculation000
Connecting000
SamSPECTRAL-package000
SamSPECTRAL0.0000.0000.001
eigen.values.100.0120.0040.018
eigen.values.10000.0040.0000.005
small0.0280.0000.026
stmFSC0.2400.0080.249