Package: Icens

Version: 1.22.0

Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings Icens_1.22.0.tar.gz

StartedAt: 2011-04-07 07:06:05 -0700 (Thu, 07 Apr 2011)

EndedAt: 2011-04-07 07:06:34 -0700 (Thu, 07 Apr 2011)

EllapsedTime: 28.5 seconds

RetCode: 0

Status:  OK

CheckDir: Icens.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/Icens.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Icens/DESCRIPTION’ ... OK
* this is package ‘Icens’ version ‘1.22.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘Icens’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
VEMICMmac: no visible binding for global variable ‘EMstep’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘testbv.R’
  Comparing ‘testbv.Rout’ to ‘testbv.Rout.save’ ...117c117
<  [6]  1.461001e+00  1.207129e+00  1.000000e+00  4.748624e-01 -2.640501e-16
---
>  [6]  1.461001e+00  1.207129e+00  1.000000e+00  4.748624e-01 -2.480201e-16
 OK
* checking PDF version of manual ... OK

* installing *source* package ‘Icens’ ...
** R
** data
** preparing package for lazy loading
Loading required package: splines
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (Icens)

name	user	system	elapsed
BVcliques	0.340	0.000	0.341
BVclmat	2.536	0.004	2.810
BVsupport	2.616	0.000	2.617
EM	0.124	0.004	0.129
EMICM	0.124	0.000	0.125
ISDM	5.656	0.004	5.670
MLEintvl	0.048	0.000	0.049
Maclist	0.020	0.000	0.024
Macmat	0.024	0.000	0.025
PGM	0.204	0.008	0.211
Plotboxes	0.068	0.000	0.066
VEM	0.196	0.000	0.195
cmv	0.004	0.000	0.002
cosmesis	0.000	0.000	0.002
hiv	0.008	0.000	0.004
plot.icsurv	0.460	0.008	0.469
pruitt	0.004	0.000	0.001