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Package 81/419HostnameOS / ArchBUILDCHECKBUILD BIN
ChIPsim 1.4.0
Peter Humburg
Snapshot Date: 2011-04-06 23:24:01 -0700 (Wed, 06 Apr 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/ChIPsim
Last Changed Rev: 50293 / Revision: 54588
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 

Summary

Package: ChIPsim
Version: 1.4.0
Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings ChIPsim_1.4.0.tar.gz
StartedAt: 2011-04-07 05:37:32 -0700 (Thu, 07 Apr 2011)
EndedAt: 2011-04-07 05:39:39 -0700 (Thu, 07 Apr 2011)
EllapsedTime: 127.7 seconds
RetCode: 0
Status:  OK 
CheckDir: ChIPsim.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/ChIPsim.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ChIPsim/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ChIPsim’ version ‘1.4.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘ChIPsim’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

ChIPsim.Rcheck/00install.out:

* installing *source* package ‘ChIPsim’ ...
** R
** inst
** preparing package for lazy loading
Loading required package: IRanges

Attaching package: 'IRanges'

The following object(s) are masked from 'package:base':

    Map, cbind, eval, mapply, order, paste, pmax, pmax.int, pmin,
    pmin.int, rbind, rep.int, table

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (ChIPsim)

ChIPsim.Rcheck/ChIPsim-Ex.timings:

nameusersystemelapsed
ChIPsim-package000
bindDens2readDens4.0240.0404.064
decodeQuality0.0000.0000.001
defaultControl0.0000.0000.002
defaultErrorProb000
defaultFunctions0.0000.0040.003
defaultGenerator0.3440.0040.348
extractQuality000
feat2dens1.6000.0081.613
featureDensity0.0000.0000.002
makeFeatures0.1440.0000.143
placeFeatures0.2160.0000.214
pos2fastq0.0560.0040.061
readError0.0040.0000.001
reconcileFeatures0.2160.0040.222
sampleReads2.8840.0162.907
simChIP000
simpleNames000
stableFeature0.0000.0000.001
writeFASTQ0.0000.0000.002