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Package 98/419HostnameOS / ArchBUILDCHECKBUILD BIN
CRImage 1.0.0
Henrik Failmezger , Yinyin Yuan
Snapshot Date: 2011-04-06 23:24:01 -0700 (Wed, 06 Apr 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/CRImage
Last Changed Rev: 50293 / Revision: 54588
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64 N O T   S U P P O R T E D

Summary

Package: CRImage
Version: 1.0.0
Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings CRImage_1.0.0.tar.gz
StartedAt: 2011-04-07 06:41:23 -0700 (Thu, 07 Apr 2011)
EndedAt: 2011-04-07 06:44:08 -0700 (Thu, 07 Apr 2011)
EllapsedTime: 164.7 seconds
RetCode: 0
Status:  OK  
CheckDir: CRImage.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.7-bioc/meat/CRImage.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CRImage/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CRImage' version '1.0.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'CRImage' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

CRImage.Rcheck/00install.out:

* installing *source* package 'CRImage' ...
** R
** inst
** preparing package for lazy loading
Loading required package: abind
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (CRImage)

CRImage.Rcheck/CRImage-Ex.timings:

nameusersystemelapsed
CRImage-package 9.83 1.0211.50
calculateCellularity10.42 1.1611.67
calculateThreshold1.610.281.89
classificationAperio0.940.030.99
classifyCells 9.34 0.5912.31
createClassifier0.940.030.98
createTrainingSet8.610.999.82
determineCellularity10.70 0.8311.92
findSlices1.130.011.14
kernelSmoother 9.18 0.7010.25
localThreshold8.050.698.91
numberOfNeighbors7.860.708.59
paintCells 9.82 0.6910.54
parseFinalScan1.020.001.01
processAperio1.080.021.10
segmentCytoplasma7.760.768.68
segmentImage7.940.688.64