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Package 74/419HostnameOS / ArchBUILDCHECKBUILD BIN
CGHnormaliter 1.4.1
Bart P.P. van Houte
Snapshot Date: 2011-04-06 23:24:01 -0700 (Wed, 06 Apr 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/CGHnormaliter
Last Changed Rev: 51623 / Revision: 54588
Last Changed Date: 2010-12-20 09:02:21 -0800 (Mon, 20 Dec 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 

Summary

Package: CGHnormaliter
Version: 1.4.1
Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings CGHnormaliter_1.4.1.tar.gz
StartedAt: 2011-04-07 06:27:22 -0700 (Thu, 07 Apr 2011)
EndedAt: 2011-04-07 06:29:22 -0700 (Thu, 07 Apr 2011)
EllapsedTime: 120.4 seconds
RetCode: 0
Status:  OK  
CheckDir: CGHnormaliter.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.7-bioc/meat/CGHnormaliter.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CGHnormaliter/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CGHnormaliter' version '1.4.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'CGHnormaliter' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

CGHnormaliter.Rcheck/00install.out:

* installing *source* package 'CGHnormaliter' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: impute
Loading required package: DNAcopy

**************************************************************************
   The plan to change the data format for CNA object has been postponed   
 in order to ensure backward compatibility with older versions of DNAcopy 
**************************************************************************

Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: CGHbase
Loading required package: marray
Loading required package: limma

Attaching package: 'CGHcall'

The following object(s) are masked from 'package:CGHbase':

    bpend, bpstart, calls, calls<-, chromosomes, copynumber,
    copynumber<-, probamp, probamp<-, probgain, probgain<-, probloss,
    probloss<-, probnorm, probnorm<-, segmented, segmented<-

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (CGHnormaliter)

CGHnormaliter.Rcheck/CGHnormaliter-Ex.timings:

nameusersystemelapsed
CGHnormaliter64.42 0.0564.92
CGHnormaliter.write.table0.40.00.4