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Package 309/419HostnameOS / ArchBUILDCHECKBUILD BIN
plier 1.20.1
Crispin Miller
Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/plier
Last Changed Rev: 51562 / Revision: 54281
Last Changed Date: 2010-12-15 15:15:34 -0800 (Wed, 15 Dec 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: plier
Version: 1.20.1
Command: D:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings plier_1.20.1.tar.gz
StartedAt: 2011-03-31 09:56:53 -0700 (Thu, 31 Mar 2011)
EndedAt: 2011-03-31 09:57:50 -0700 (Thu, 31 Mar 2011)
EllapsedTime: 56.4 seconds
RetCode: 0
Status:  OK  
CheckDir: plier.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.7-bioc/meat/plier.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'plier/DESCRIPTION' ... OK
* this is package 'plier' version '1.20.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'plier' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: justPlier.Rd:50-52: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK

plier.Rcheck/00install.out:

* installing *source* package 'plier' ...
** libs
x86_64-w64-mingw32-g++ -I"D:/biocbld/BBS-2˜1.7-B/R/include"         -O2 -Wall  -c affyplier.cpp -o affyplier.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/BBS-2˜1.7-B/R/include"         -O2 -Wall  -c plier_impl.cpp -o plier_impl.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/BBS-2˜1.7-B/R/include"         -O2 -Wall  -c plieralg.cpp -o plieralg.o
plieralg.cpp: In function 'long int NewtonPlier(plier_data*, double&)':
plieralg.cpp:910:9: warning: 'LogLikelihood' may be used uninitialized in this function
plieralg.cpp: At global scope:
plieralg.cpp:49:12: warning: 'g_ErrorCode' defined but not used
x86_64-w64-mingw32-g++ -I"D:/biocbld/BBS-2˜1.7-B/R/include"         -O2 -Wall  -c rwrapper.cpp -o rwrapper.o
x86_64-w64-mingw32-g++ -shared -s -static-libgcc -o plier.dll tmp.def affyplier.o plier_impl.o plieralg.o rwrapper.o -LD:/biocbld/BBS-2˜1.7-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.7-bioc/meat/plier.Rcheck/plier/libs/x64
** R
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (plier)