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Package 239/419HostnameOS / ArchBUILDCHECKBUILD BIN
maigesPack 1.14.0
Gustavo H. Esteves
Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/maigesPack
Last Changed Rev: 50293 / Revision: 54281
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: maigesPack
Version: 1.14.0
Command: D:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings maigesPack_1.14.0.tar.gz
StartedAt: 2011-03-31 09:04:49 -0700 (Thu, 31 Mar 2011)
EndedAt: 2011-03-31 09:16:27 -0700 (Thu, 31 Mar 2011)
EllapsedTime: 698.0 seconds
RetCode: 0
Status:  OK  
CheckDir: maigesPack.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.7-bioc/meat/maigesPack.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'maigesPack/DESCRIPTION' ... OK
* this is package 'maigesPack' version '1.14.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'maigesPack' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

maigesPack.Rcheck/00install.out:

* installing *source* package 'maigesPack' ...
** libs
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.7-B/R/include"         -O2 -Wall  -std=gnu99 -c Minfo.c -o Minfo.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.7-B/R/include"         -O2 -Wall  -std=gnu99 -c bootstrapT.c -o bootstrapT.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.7-B/R/include"         -O2 -Wall  -std=gnu99 -c register.c -o register.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.7-B/R/include"         -O2 -Wall  -std=gnu99 -c robustCorr.c -o robustCorr.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.7-B/R/include"         -O2 -Wall  -std=gnu99 -c stats.c -o stats.o
stats.c: In function 'stats_median_from_sorted_data':
stats.c:80:22: warning: operation on 'i' may be undefined
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o maigesPack.dll tmp.def Minfo.o bootstrapT.o register.o robustCorr.o stats.o -LD:/biocbld/BBS-2˜1.7-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.7-bioc/meat/maigesPack.Rcheck/maigesPack/libs/x64
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: limma
Loading required package: marray
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (maigesPack)

maigesPack.Rcheck/maigesPack-Ex.timings:

nameusersystemelapsed
MI000
activeMod3.650.003.66
activeModScoreHTML1.830.001.82
activeNet5.190.025.21
activeNetScoreHTML5.170.005.17
addGeneGrps000
addPaths000
bootstrapCor0.060.000.06
bootstrapMI0.250.000.25
bootstrapT000
boxplot-methods160.77 7.20168.02
bracketMethods0.280.000.28
calcA0.220.080.30
calcW0.310.080.39
classifyKNN0.300.000.32
classifyKNNsc0.420.010.44
classifyLDA1.560.021.58
classifyLDAsc2.80.02.8
classifySVM0.740.000.75
classifySVMsc1.170.001.17
coerce-methods0.170.010.19
compCorr000
createMaigesRaw0.370.020.39
deGenes2by2BootT0.720.000.72
deGenes2by2Ttest0.370.000.38
deGenes2by2Wilcox0.380.000.37
deGenesANOVA0.370.000.38
designANOVA0.240.000.23
dim-methods0.080.000.08
getLabels0.110.000.11
hierM2.390.082.47
hierMde0.540.000.54
image-methods4.910.004.91
kmeansM2.440.032.47
kmeansMde0.610.000.61
loadData000
normLoc2.210.002.22
normOLIN0.100.000.09
normRepLoess0.090.000.09
normScaleLimma186.41 6.11192.66
normScaleMarray101.22 2.87104.09
plot-methods10.99 0.0211.31
plotGenePair0.120.000.13
print-methods0.210.000.20
relNet2TGF0.290.000.30
relNetworkB3.160.003.15
relNetworkM0.110.010.13
robustCorr000
selSpots0.510.020.53
show-methods0.190.000.19
somM2.910.002.92
somMde0.640.000.64
summarizeReplicates3.920.023.94
summary-methods0.20.00.2
tableClass1.390.011.41
tablesDE2.710.002.70