Package: genomes

Version: 1.6.0

Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings genomes_1.6.0.tar.gz

StartedAt: 2011-03-31 06:12:25 -0700 (Thu, 31 Mar 2011)

EndedAt: 2011-03-31 06:13:10 -0700 (Thu, 31 Mar 2011)

EllapsedTime: 45.6 seconds

RetCode: 0

Status:  OK

CheckDir: genomes.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/genomes.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘genomes/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘genomes’ version ‘1.6.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘genomes’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘genomes’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (genomes)

name	user	system	elapsed
doublingTime	0.192	0.004	0.195
genomes-lines	0.156	0.004	0.160
genomes-plot	0.144	0.004	0.148
genomes-print	0.132	0.000	0.130
genomes-subset	0.068	0.000	0.069
genomes-summary	0.008	0.012	0.020
genomes-update	0.000	0.000	0.003
genomes	0.096	0.008	0.105
genus	0.204	0.004	0.227
gold	1.308	0.028	1.335
hmp	0.072	0.000	0.070
image2	0.428	0.000	0.430
lenvs	0.02	0.00	0.02
leuks	0.116	0.000	0.119
like	0.080	0.000	0.082
lproks	0.204	0.008	0.211
plotby	0.252	0.012	0.265
species	0.296	0.000	0.294
table2	0.012	0.000	0.012
taxid2names	0.008	0.000	3.122
term2neighbor	0.048	0.000	1.154
term2summary	1.552	0.024	6.233
top	0.324	0.000	0.321
virus	0.072	0.004	1.319