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Package 152/419HostnameOS / ArchBUILDCHECKBUILD BIN
genefilter 1.32.0
Biocore Team c/o BioC user list
Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/genefilter
Last Changed Rev: 50293 / Revision: 54281
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: genefilter
Version: 1.32.0
Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings genefilter_1.32.0.tar.gz
StartedAt: 2011-03-31 06:00:25 -0700 (Thu, 31 Mar 2011)
EndedAt: 2011-03-31 06:01:26 -0700 (Thu, 31 Mar 2011)
EllapsedTime: 60.6 seconds
RetCode: 0
Status:  OK 
CheckDir: genefilter.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/genefilter.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘genefilter/DESCRIPTION’ ... OK
* this is package ‘genefilter’ version ‘1.32.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘genefilter’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
eSetFilter : buildGUI: no visible binding for '<<-' assignment to ‘END’
eSetFilter : buildGUI : finish: no visible binding for '<<-' assignment
  to ‘END’
eSetFilter : buildGUI: no visible binding for global variable ‘END’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: ROC
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

genefilter.Rcheck/00install.out:

* installing *source* package ‘genefilter’ ...
** libs
g++ -I/home/biocbuild/bbs-2.7-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c half_range_mode.cpp -o half_range_mode.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.7-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c init.c -o init.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.7-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c nd.c -o nd.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.7-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c pAUC.c -o pAUC.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.7-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c rowPAUCs.c -o rowPAUCs.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.7-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c rowttests.c -o rowttests.o
gfortran   -fpic  -g -O -c ttest.f -o ttest.o
g++ -shared -L/usr/local/lib64 -o genefilter.so half_range_mode.o init.o nd.o pAUC.o rowPAUCs.o rowttests.o ttest.o -lgfortran -lm -L/home/biocbuild/bbs-2.7-bioc/R/lib -lR
installing to /loc/home/biocbuild/bbs-2.7-bioc/meat/genefilter.Rcheck/genefilter/libs
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a new generic function for "plot" in "genefilter"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (genefilter)

genefilter.Rcheck/genefilter-Ex.timings:

nameusersystemelapsed
Anova0.0080.0000.010
allNA000
coxfilter0.0840.0000.085
cv0.0040.0000.001
dist20.0040.0000.005
eSetFilter000
filter_volcano000
filtered_p000
filterfun0.0000.0000.001
findLargest0.6200.0360.653
gapFilter0.0000.0000.001
genefilter0.0000.0000.002
genefinder0.0760.0200.093
genescale0.0000.0000.001
half.range.mode5.1000.0085.120
kOverA0.0000.0000.001
kappa_p000
maxA000
nsFilter0.4800.0120.489
pOverA000
rejection_plot000
rowFtests5.6280.0885.806
rowROC-class0.1360.0040.139
rowSds0.0000.0000.002
rowpAUCs1.7240.0001.762
shorth0.0000.0000.002
tdata0.0000.0040.002
ttest0.0080.0000.007