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Package 133/419HostnameOS / ArchBUILDCHECKBUILD BIN
flowCore 1.16.0
F. Hahne
Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/flowCore
Last Changed Rev: 50293 / Revision: 54281
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: flowCore
Version: 1.16.0
Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings flowCore_1.16.0.tar.gz
StartedAt: 2011-03-31 06:21:56 -0700 (Thu, 31 Mar 2011)
EndedAt: 2011-03-31 06:25:30 -0700 (Thu, 31 Mar 2011)
EllapsedTime: 214.9 seconds
RetCode: 0
Status:  OK  
CheckDir: flowCore.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.7-bioc/meat/flowCore.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowCore/DESCRIPTION' ... OK
* this is package 'flowCore' version '1.16.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'flowCore' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

flowCore.Rcheck/00install.out:

* installing *source* package 'flowCore' ...
** libs
g++ -I"E:/biocbld/BBS-2˜1.7-B/R/include"         -O2 -Wall  -c FastLogicle.cpp -o FastLogicle.o
g++ -I"E:/biocbld/BBS-2˜1.7-B/R/include"         -O2 -Wall  -c Logicle.cpp -o Logicle.o
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include"         -O3 -Wall  -std=gnu99 -c biexponential.c -o biexponential.o
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include"         -O3 -Wall  -std=gnu99 -c inPolygon.c -o inPolygon.o
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include"         -O3 -Wall  -std=gnu99 -c inPolytope.c -o inPolytope.o
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include"         -O3 -Wall  -std=gnu99 -c init.c -o init.o
g++ -I"E:/biocbld/BBS-2˜1.7-B/R/include"         -O2 -Wall  -c logicleTransform.cpp -o logicleTransform.o
g++ -shared -s -static-libgcc -o flowCore.dll tmp.def FastLogicle.o Logicle.o biexponential.o inPolygon.o inPolytope.o init.o logicleTransform.o -LE:/biocbld/BBS-2˜1.7-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.7-bioc/meat/flowCore.Rcheck/flowCore/libs/i386
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (flowCore)

flowCore.Rcheck/flowCore-Ex.timings:

nameusersystemelapsed
EHtrans-class0.210.000.22
Subset-methods1.580.001.57
actionItem-class000
arcsinhTransform0.140.020.18
asinht-class0.080.000.07
biexponentialTransform15.47 0.2815.90
boundaryFilter-class0.390.010.40
characterOrTransformation-class0.020.000.02
coerce0.120.000.12
compensateActionItem-class000
compensateView-class000
compensatedParameter-class0.330.020.35
compensation-class0.720.000.71
curv1Filter-class1.230.001.24
curv2Filter-class5.210.005.20
dg1polynomial-class0.060.000.06
each_col-methods0.080.000.08
ellipsoidGate0.140.000.14
exponential-class0.060.000.07
expressionFilter-class0.160.000.15
fcReference-class000
filter-methods1.790.001.80
filter-on-methods0.30.00.3
filterList-class000
filterResult-class0.020.000.02
filterResultList-class2.840.002.86
filterSet-class0.080.000.07
filterSummary-class0.880.000.90
filterSummaryList-class2.640.002.67
flowFrame-class10.70 0.0810.86
flowSet-class6.690.006.68
fsApply0.360.000.38
gateActionItem-class000
gateView-class000
hyperlog-class1.970.002.00
identifier-methods0.040.000.05
inverseLogicleTransform1.260.001.28
invsplitscale-class0.070.000.07
keyword-methods1.560.011.62
kmeansFilter0.340.020.36
linearTransform0.080.000.07
lnTransform4.430.034.64
logTransform0.090.000.23
logarithm-class0.070.010.08
logicalFilterResult-class000
logicleTransform1.470.021.48
manyFilterResult-class000
multipleFilterResult-class000
norm2Filter-class0.260.000.65
normalizeActionItem-class000
normalizeView-class000
parameters-methods0.060.000.07
polygonGate0.140.000.14
quadGate0.410.000.40
quadratic-class0.050.020.07
quadraticTransform0.080.010.10
ratio-class0.080.000.07
read.FCS0.110.000.11
read.FCSheader0.010.000.02
read.flowSet0.250.000.25
rectangleGate0.280.000.29
sampleFilter-class0.130.000.12
scaleTransform0.080.000.07
singleParameterTransform-class000
sinht-class0.060.000.07
split-methods2.240.042.26
splitScaleTransform3.640.063.74
splitscale-class0.040.000.06
squareroot-class0.180.000.17
subsettingActionItem-class000
subsettingView-class0.000.000.03
timeFilter-class4.780.014.80
transform-class000
transformActionItem-class000
transformFilter-class0.200.020.22
transformList-class1.270.001.26
transformMap-class000
transformView-class000
truncateTransform0.090.000.10
unitytransform-class0.060.000.06
view-class000
workFlow-class000
write.FCS0.130.000.19
write.flowSet1.640.001.72