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Package 29/419HostnameOS / ArchBUILDCHECKBUILD BIN
aroma.light 1.18.4
Henrik Bengtsson
Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/aroma.light
Last Changed Rev: 53482 / Revision: 54281
Last Changed Date: 2011-03-07 00:18:55 -0800 (Mon, 07 Mar 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: aroma.light
Version: 1.18.4
Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings aroma.light_1.18.4.tar.gz
StartedAt: 2011-03-31 05:15:50 -0700 (Thu, 31 Mar 2011)
EndedAt: 2011-03-31 05:18:19 -0700 (Thu, 31 Mar 2011)
EllapsedTime: 149.9 seconds
RetCode: 0
Status:  OK  
CheckDir: aroma.light.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.7-bioc/meat/aroma.light.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'aroma.light/DESCRIPTION' ... OK
* this is package 'aroma.light' version '1.18.4'
* package encoding: latin1
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'aroma.light' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: R.basic
* checking examples ... OK
* checking PDF version of manual ... OK

aroma.light.Rcheck/00install.out:

* installing *source* package 'aroma.light' ...
** R
** inst
** preparing package for lazy loading
R.methodsS3 v1.2.1 (2010-09-18) successfully loaded. See ?R.methodsS3 for help.
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (aroma.light)

aroma.light.Rcheck/aroma.light-Ex.timings:

nameusersystemelapsed
backtransformAffine.matrix000
backtransformPrincipalCurve.matrix1.490.031.88
calibrateMultiscan.matrix000
callNaiveGenotypes.numeric1.490.012.06
distanceBetweenLines0.030.000.06
findPeaksAndValleys.density0.090.000.11
fitPrincipalCurve.matrix1.050.022.08
fitXYCurve.matrix0.110.000.11
iwpca.matrix0.010.000.01
likelihood.smooth.spline0.780.002.25
medianPolish.matrix0.020.000.03
normalizeAffine.matrix25.07 0.0325.59
normalizeCurveFit.matrix25.11 0.0225.19
normalizeDifferencesToAverage.list0.150.000.15
normalizeFragmentLength2.400.002.41
normalizeQuantileRank.list0.280.000.28
normalizeQuantileRank.matrix0.150.000.16
normalizeQuantileSpline.matrix4.920.005.20
normalizeTumorBoost.numeric0.430.000.82
robustSmoothSpline0.060.001.14
sampleCorrelations.matrix0.210.000.20
sampleTuples000
weightedMedian4.420.144.57
wpca.matrix0.080.000.07