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Package 246/419HostnameOS / ArchBUILDCHECKBUILD BIN
MassArray 1.2.0
Reid F. Thompson
Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/MassArray
Last Changed Rev: 50293 / Revision: 54281
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ WARNINGS ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: MassArray
Version: 1.2.0
Command: D:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings MassArray_1.2.0.tar.gz
StartedAt: 2011-03-31 09:10:40 -0700 (Thu, 31 Mar 2011)
EndedAt: 2011-03-31 09:12:33 -0700 (Thu, 31 Mar 2011)
EllapsedTime: 112.9 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: MassArray.Rcheck
Warnings: 1

Command output

* using log directory 'D:/biocbld/bbs-2.7-bioc/meat/MassArray.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MassArray/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MassArray' version '1.2.0'
* checking package name space information ...Warning: unknown namespace directive: S3Method(plot, MassArrayData)
Warning: unknown namespace directive: S3Method(sum, MassArraySpectrum)
 OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'MassArray' can be installed ... WARNING
Found the following significant warnings:
  Warning: unknown namespace directive: S3Method(plot, MassArrayData)
  Warning: unknown namespace directive: S3Method(sum, MassArraySpectrum)
  Warning: unknown namespace directive: S3Method(plot, MassArrayData)
  Warning: unknown namespace directive: S3Method(sum, MassArraySpectrum)
See 'D:/biocbld/bbs-2.7-bioc/meat/MassArray.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'D:/biocbld/bbs-2.7-bioc/meat/MassArray.Rcheck/00check.log'
for details

MassArray.Rcheck/00install.out:

* installing *source* package 'MassArray' ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Warning: unknown namespace directive: S3Method(plot, MassArrayData)
Warning: unknown namespace directive: S3Method(sum, MassArraySpectrum)
** help
*** installing help indices
** building package indices ...
Warning: unknown namespace directive: S3Method(plot, MassArrayData)
Warning: unknown namespace directive: S3Method(sum, MassArraySpectrum)
** testing if installed package can be loaded

* DONE (MassArray)

MassArray.Rcheck/MassArray-Ex.timings:

nameusersystemelapsed
MassArray.example.data0.020.000.01
MassArrayData-class000
MassArrayFragment-class000
MassArrayPeak-class000
MassArraySpectrum-class000
ampliconPrediction2.120.012.14
analyzeCpGs0.20.00.2
bisConvert000
calcMW000
calcMeth000
calcPercentAdduct0.060.000.06
calcPercentConversion0.050.000.05
combine4.860.004.86
convControl0.030.000.03
countCGs000
createWiggle0.010.000.01
estimatePrimerDimer0.10.00.1
evaluateSNPs26.98 0.0227.00
expandSequence000
findCollisions000
findFragments0.020.000.01
findPeaks000
identifySNPs0.030.000.03
inSilicoFragmentation000
isAssayable000
numCollisions000
plot.MassArrayData0.030.010.05
position0.030.000.03
revComplement000
rnaDigest000
samples0.030.000.03
sum.MassArraySpectrum0.740.001.66