Package: LMGene

Version: 2.6.0

Command: /Library/Frameworks/R.framework/Versions/2.12/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch LMGene_2.6.0.tar.gz

StartedAt: 2011-03-31 06:30:15 -0700 (Thu, 31 Mar 2011)

EndedAt: 2011-03-31 06:33:43 -0700 (Thu, 31 Mar 2011)

EllapsedTime: 208.0 seconds

RetCode: 0

Status:  OK

CheckDir: LMGene.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.7-bioc/meat/LMGene.Rcheck’
* using R version 2.12.2 Patched (2011-02-25 r54591)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘LMGene/DESCRIPTION’ ... OK
* this is package ‘LMGene’ version ‘2.6.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘LMGene’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘LMGene’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: splines
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (LMGene)

name	user	system	elapsed
LMGene	4.379	0.920	5.442
genediff	4.108	0.880	5.120
glog	0.014	0.003	0.018
lnorm	0.237	0.010	0.254
lnormeS	0.153	0.009	0.165
neweS	0.108	0.004	0.113
norm	0.159	0.009	0.175
plotMeanSD	0.231	0.008	0.256
psmeans	0.252	0.013	0.311
rowaov	4.023	0.874	5.114
sample.eS	0.111	0.004	0.128
sample.ind	0.244	0.010	0.284
sample.mat	0.112	0.004	0.136
tranest	16.875	5.189	22.962
tranestAffyProbeLevel	80.784	27.389	114.561
transeS	0.015	0.003	0.018
vlist	0.004	0.001	0.005