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Package 220/419HostnameOS / ArchBUILDCHECKBUILD BIN
KEGGSOAP 1.24.0
Biocore Team c/o BioC user list
Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/KEGGSOAP
Last Changed Rev: 50293 / Revision: 54281
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: KEGGSOAP
Version: 1.24.0
Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings KEGGSOAP_1.24.0.tar.gz
StartedAt: 2011-03-31 07:04:24 -0700 (Thu, 31 Mar 2011)
EndedAt: 2011-03-31 07:05:55 -0700 (Thu, 31 Mar 2011)
EllapsedTime: 90.4 seconds
RetCode: 0
Status:  OK  
CheckDir: KEGGSOAP.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.7-bioc/meat/KEGGSOAP.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'KEGGSOAP/DESCRIPTION' ... OK
* this is package 'KEGGSOAP' version '1.24.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'KEGGSOAP' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

KEGGSOAP.Rcheck/00install.out:

* installing *source* package 'KEGGSOAP' ...
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (KEGGSOAP)

KEGGSOAP.Rcheck/KEGGSOAP-Ex.timings:

nameusersystemelapsed
bconv0.060.031.97
bget0.030.022.50
get.genes.by.motifs0.050.002.56
get.genes.by.organism0.030.000.77
get.genes.by.pathway0.080.033.04
get.ko.by.gene0.200.025.32
get.motifs.by.gene0.030.001.34
get.paralogs.by.gene0.060.001.72
get.pathways.by.genes0.060.003.17
getBestNeighbors0.070.013.50
list.organisms2.330.007.03
mark.pathway.by.objects0.030.005.56
search.compounds.by.name0.140.036.11
search.glycans.by.name0.150.005.98