HilbertVisGUI 1.8.0
Simon Anders
| Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/HilbertVisGUI | | Last Changed Rev: 50293 / Revision: 54281 | | Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010) |
| lamb2 | Linux (openSUSE 11.2) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ WARNINGS ] | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | N O T S U P P O R T E D |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* using log directory 'E:/biocbld/bbs-2.7-bioc/meat/HilbertVisGUI.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'HilbertVisGUI/DESCRIPTION' ... OK
* this is package 'HilbertVisGUI' version '1.8.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'HilbertVisGUI' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... WARNING
Non-portable flags in variable 'PKG_CFLAGS':
-mms-bitfields
Non-portable flags in variable 'PKG_CPPFLAGS':
-mms-bitfields
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
WARNING: There was 1 warning, see
'E:/biocbld/bbs-2.7-bioc/meat/HilbertVisGUI.Rcheck/00check.log'
for details
* installing *source* package 'HilbertVisGUI' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include" `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DMSWINDOWS `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DMSWINDOWS -O3 -Wall -std=gnu99 -c R_env_prot.c -o R_env_prot.o
g++ -I"E:/biocbld/BBS-2˜1.7-B/R/include" `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DMSWINDOWS -O2 -Wall -c R_interface.cc -o R_interface.o
In file included from E:/biocbld/BBS-2˜1.7-B/R/include/R.h:44:0,
from R_interface.cc:17:
E:/biocbld/BBS-2˜1.7-B/R/include/R_ext/RS.h:43:0: warning: "ERROR" redefined
c:\rtools212\mingw\bin\../lib/gcc/mingw32/4.5.0/../../../../include/wingdi.h:313:0: note: this is the location of the previous definition
R_interface.cc: In function 'SEXPREC* R_display_hilbert(SEXPREC*)':
R_interface.cc:510:44: warning: comparison between signed and unsigned integer expressions
R_interface.cc:509:11: warning: unused variable 'palette_level'
R_interface.cc: In member function 'void MainWindowForRForBidir::set_palette_level(double)':
R_interface.cc:702:44: warning: comparison between signed and unsigned integer expressions
R_interface.cc: In function 'RDataVector<double>* create_normal_or_Rle_RDataVector(SEXPREC*, long int, binning_mode)':
R_interface.cc:431:1: warning: control reaches end of non-void function
R_interface.cc: In member function 'double RDataVector<data_el_t>::get_bin_value(long int, long int) const [with data_el_t = int]':
R_interface.cc:119:8: warning: 'val' may be used uninitialized in this function
R_interface.cc: In member function 'double RDataVector<data_el_t>::get_bin_value(long int, long int) const [with data_el_t = double]':
R_interface.cc:180:11: warning: 'val' may be used uninitialized in this function
R_interface.cc: In function 'SEXPREC* R_display_hilbert(SEXPREC*)':
R_interface.cc:535:20: warning: 'datavec' may be used uninitialized in this function
g++ -I"E:/biocbld/BBS-2˜1.7-B/R/include" `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DMSWINDOWS -O2 -Wall -c colorizers.cc -o colorizers.o
g++ -I"E:/biocbld/BBS-2˜1.7-B/R/include" `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DMSWINDOWS -O2 -Wall -c display.cc -o display.o
g++ -I"E:/biocbld/BBS-2˜1.7-B/R/include" `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DMSWINDOWS -O2 -Wall -c ruler.cc -o ruler.o
g++ -I"E:/biocbld/BBS-2˜1.7-B/R/include" `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DMSWINDOWS -O2 -Wall -c window.cc -o window.o
g++ -shared -s -static-libgcc -o HilbertVisGUI.dll tmp.def R_env_prot.o R_interface.o colorizers.o display.o ruler.o window.o -LC:/gtkmm/lib -lgtkmm-2.4 -lgiomm-2.4 -lgdkmm-2.4 -latkmm-1.6 -lgtk-win32-2.0 -lpangomm-1.4 -lcairomm-1.0 -lglibmm-2.4 -lsigc-2.0 -lgdk-win32-2.0 -latk-1.0 -lgio-2.0 -lgdk_pixbuf-2.0 -lpangowin32-1.0 -lgdi32 -lpangocairo-1.0 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -lglib-2.0 -lintl -LE:/biocbld/BBS-2˜1.7-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.7-bioc/meat/HilbertVisGUI.Rcheck/HilbertVisGUI/libs/i386
** R
** inst
** preparing package for lazy loading
Loading required package: grid
Loading required package: lattice
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (HilbertVisGUI)