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Package 68/83HostnameOS / ArchBUILDCHECKBUILD BIN
ppiData 0.1.14
Tony Chiang
Snapshot Date: 2010-09-24 00:28:34 -0700 (Fri, 24 Sep 2010)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/ppiData
Last Changed Rev: 1101 / Revision: 1309
Last Changed Date: 2009-12-05 17:17:35 -0800 (Sat, 05 Dec 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: ppiData
Version: 0.1.14
Command: /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R CMD check --no-vignettes --timings ppiData_0.1.14.tar.gz
StartedAt: 2010-09-24 04:05:18 -0700 (Fri, 24 Sep 2010)
EndedAt: 2010-09-24 04:08:47 -0700 (Fri, 24 Sep 2010)
EllapsedTime: 209.2 seconds
RetCode: 0
Status:  OK 
CheckDir: ppiData.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.6-data-experiment/meat/ppiData.Rcheck'
* using R version 2.11.1 Patched (2010-05-31 r52167)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'ppiData/DESCRIPTION' ... OK
* this is package 'ppiData' version '0.1.14'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ppiData' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: intAct2Sys.Rd:33-35: Dropping empty section \examples
prepare_Rd: twTableAPMS.Rd:22-23: Dropping empty section \details
prepare_Rd: twTableAPMS.Rd:24-26: Dropping empty section \source
prepare_Rd: twTableAPMS.Rd:27-28: Dropping empty section \references
prepare_Rd: twTableY2H.Rd:22-23: Dropping empty section \details
prepare_Rd: twTableY2H.Rd:24-26: Dropping empty section \source
prepare_Rd: twTableY2H.Rd:27-28: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

ppiData.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package ‘ppiData’ ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (ppiData)

ppiData.Rcheck/ppiData-Ex.timings:

nameusersystemelapsed
Cagney2001BPGraph0.0030.0010.003
Gavin2002BPGraph0.0020.0010.002
Gavin2006bPGraph0.0020.0010.004
Hazbun2003BPGraph0.0020.0010.024
Ho2002BPGraph0.0020.0010.003
Ito2001BPGraph0.0020.0010.002
ItoCore2001BPGraph0.0020.0010.020
ItoFull2001BPGraph0.0020.0010.017
Krogan2004BPGraph0.0020.0010.009
Krogan2006BPGraph0.0020.0010.002
Tong2002BPGraph0.0020.0010.011
Uetz2000BPGraph10.0020.0010.002
Uetz2000BPGraph20.0020.0010.013
Zhao2005BPGraph0.0020.0000.003
bpExperimentNames0.0050.0110.036
collectIntactPPIData22.391 7.59167.231
createBPList0.0190.0020.021
intActPPIData0.0040.0020.038
map2Systematic0.0050.0010.071
ppipred0.0020.0010.002
sWAC2Sys0.0020.0010.002
stochasticBaits0.0070.0010.008
tableList0.0100.0010.012
twTableAPMS0.0020.0000.004
twTableY2H0.0020.0010.003
viableProteins0.0150.0020.018
y2h0.0020.0000.002
y2hSysGW0.0180.0030.035