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Package 295/389HostnameOS / ArchBUILDCHECKBUILD BIN
qpgraph 1.4.1
Robert Castelo
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/qpgraph
Last Changed Rev: 46669 / Revision: 49923
Last Changed Date: 2010-05-03 13:15:30 -0700 (Mon, 03 May 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: qpgraph
Version: 1.4.1
Command: D:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings qpgraph_1.4.1.tar.gz
StartedAt: 2010-10-04 18:14:28 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 18:16:50 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 141.9 seconds
RetCode: 0
Status:  OK  
CheckDir: qpgraph.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'D:/biocbld/bbs-2.6-bioc/meat/qpgraph.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'qpgraph/DESCRIPTION' ... OK
* this is package 'qpgraph' version '1.4.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'qpgraph' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

qpgraph.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'qpgraph' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
  making DLL ...
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -std=gnu99 -c cliquer.c -o cliquer.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -std=gnu99 -c graph.c -o graph.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -std=gnu99 -c qpgraph.c -o qpgraph.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -std=gnu99 -c reorder.c -o reorder.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o qpgraph.dll tmp.def cliquer.o graph.o qpgraph.o reorder.o -LD:/biocbld/bbs-2.6-bioc/R/bin -lRlapack -LD:/biocbld/bbs-2.6-bioc/R/bin -lRblas -LD:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to D:/biocbld/bbs-2.6-bioc/meat/qpgraph.Rcheck/qpgraph/libs/x64
  ... done
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (qpgraph)

qpgraph.Rcheck/qpgraph-Ex.timings:

nameusersystemelapsed
EcoliOxygen0.070.000.07
qpAnyGraph0.150.000.15
qpAvgNrr0.780.000.78
qpCItest0.050.010.06
qpClique0.340.000.35
qpCliqueNumber0.530.000.53
qpEdgeNrr0.050.020.06
qpFunctionalCoherence76.11 0.5177.19
qpG2Sigma0.10.00.1
qpGetCliques0.480.000.48
qpGraph0.270.020.28
qpGraphDensity0.340.000.35
qpHist0.270.000.26
qpIPF0.360.000.36
qpK2ParCor0.090.000.10
qpNrr0.250.000.25
qpPAC0.480.000.49
qpPCC0.250.010.26
qpPRscoreThreshold0.230.000.23
qpPrecisionRecall0.270.000.27
qpRndGraph0.010.000.01
qpRndWishart000