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Package 283/389HostnameOS / ArchBUILDCHECKBUILD BIN
plateCore 1.6.0
Errol Strain
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/plateCore
Last Changed Rev: 46401 / Revision: 49923
Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: plateCore
Version: 1.6.0
Command: D:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings plateCore_1.6.0.tar.gz
StartedAt: 2010-10-04 18:08:01 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 18:12:03 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 241.8 seconds
RetCode: 0
Status:  OK  
CheckDir: plateCore.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'D:/biocbld/bbs-2.6-bioc/meat/plateCore.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'plateCore/DESCRIPTION' ... OK
* this is package 'plateCore' version '1.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'plateCore' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

plateCore.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'plateCore' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)

Attaching package: 'flowCore'

The following object(s) are masked from 'package:stats':

    alias, filter

Loading required package: lattice
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Loading required package: RColorBrewer

Attaching package: 'latticeExtra'

The following object(s) are masked from 'package:flowViz':

    ecdfplot

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (plateCore)

plateCore.Rcheck/plateCore-Ex.timings:

nameusersystemelapsed
Subset-methods4.940.024.95
applyControlGates-methods19.59 0.0119.61
compensate-methods7.330.007.33
compensationSet0.210.000.20
densityplot-methods2.210.002.22
fixAutoFl-methods7.690.007.69
flowPlate-class4.310.004.31
flowPlate-method4.270.004.27
fpbind-methods10.10 0.0310.16
getGroups-methods1.850.001.84
gutterPlot-methods1.870.001.87
mfiPlot-methods21.39 0.0922.07
on-methods11.85 0.0311.87
panel.densityplot.flowPlate2.260.022.28
panel.xyplot.flowPlate2.100.022.11
plateCore-package4.280.004.31
plateSet-methods4.140.014.17
plotPlate-methods4.830.004.83
prepanel.densityplot.flowPlate2.030.002.03
prepanel.xyplot.flowPlate2.070.022.08
setControlGates-methods4.600.004.59
summaryStats-methods20.37 0.0120.39
wellAnnotation-methods1.830.001.83
xyplot-methods2.050.002.04