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Package 241/389HostnameOS / ArchBUILDCHECKBUILD BIN
methVisual 1.0.1
Arie Zackay
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/methVisual
Last Changed Rev: 46939 / Revision: 49923
Last Changed Date: 2010-05-18 09:50:11 -0700 (Tue, 18 May 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: methVisual
Version: 1.0.1
Command: /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R CMD check --no-vignettes --timings methVisual_1.0.1.tar.gz
StartedAt: 2010-10-04 17:52:35 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 17:54:49 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 133.7 seconds
RetCode: 0
Status:  OK 
CheckDir: methVisual.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.6-bioc/meat/methVisual.Rcheck'
* using R version 2.11.1 Patched (2010-05-31 r52167)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'methVisual/DESCRIPTION' ... OK
* this is package 'methVisual' version '1.0.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'methVisual' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

methVisual.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package ‘methVisual’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: IRanges

Attaching package: 'IRanges'

The following object(s) are masked from 'package:base':

    Map, cbind, mapply, order, paste, pmax, pmax.int, pmin, pmin.int,
    rbind, rep.int, table

Loading required package: proto
Loading required package: DBI
Loading required package: RSQLite
Loading required package: RSQLite.extfuns
Loading required package: chron
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (methVisual)

methVisual.Rcheck/methVisual-Ex.timings:

nameusersystemelapsed
Cooccurrence0.8110.0280.876
MethAlignNW4.4180.1264.824
MethDataInput0.0650.0180.096
MethLollipops0.0210.0020.023
MethylQC3.5640.0573.713
cgInAlign0.0030.0010.003
cgMethFinder0.0010.0000.001
coversionGenom0.0000.0010.001
findNonAligned0.0040.0020.005
heatMapMeth0.1320.0080.213
makeDataMethGFF0.5490.0640.654
makeLocalExpDir0.0490.0170.082
makeTabFilePath0.0530.0050.087
matrixSNP0.5060.0140.549
methCA0.0220.0040.029
methData0.0020.0010.003
methFisherTest0.0590.0020.066
methWhitneyUTest0.0070.0010.008
plotAbsMethyl0.0050.0010.006
plotMatrixSNP1.0700.0201.169
readBisulfFASTA0.0550.0170.091
selectRefSeq0.0510.0180.078