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Package 223/389HostnameOS / ArchBUILDCHECKBUILD BIN
maigesPack 1.12.0
Gustavo H. Esteves
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/maigesPack
Last Changed Rev: 46401 / Revision: 49923
Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: maigesPack
Version: 1.12.0
Command: E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings maigesPack_1.12.0.tar.gz
StartedAt: 2010-10-04 18:59:03 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 19:05:03 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 360.3 seconds
RetCode: 0
Status:  OK  
CheckDir: maigesPack.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.6-bioc/meat/maigesPack.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'maigesPack/DESCRIPTION' ... OK
* this is package 'maigesPack' version '1.12.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'maigesPack' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

maigesPack.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'maigesPack' ...
** libs
  making DLL ...
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O3 -Wall  -std=gnu99 -c Minfo.c -o Minfo.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O3 -Wall  -std=gnu99 -c bootstrapT.c -o bootstrapT.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O3 -Wall  -std=gnu99 -c register.c -o register.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O3 -Wall  -std=gnu99 -c robustCorr.c -o robustCorr.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O3 -Wall  -std=gnu99 -c stats.c -o stats.o
gcc -shared -s -static-libgcc -o maigesPack.dll tmp.def Minfo.o bootstrapT.o register.o robustCorr.o stats.o -LE:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to E:/biocbld/bbs-2.6-bioc/meat/maigesPack.Rcheck/maigesPack/libs
  ... done
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: limma
Loading required package: marray
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (maigesPack)

maigesPack.Rcheck/maigesPack-Ex.timings:

nameusersystemelapsed
MI0.020.000.02
activeMod3.480.053.53
activeModScoreHTML1.800.031.95
activeNet5.220.015.24
activeNetScoreHTML5.180.025.29
addGeneGrps000
addPaths000
bootstrapCor0.080.000.08
bootstrapMI0.270.000.27
bootstrapT000
boxplot-methods62.62 4.7067.41
bracketMethods0.300.000.29
calcA0.270.070.33
calcW0.330.070.40
classifyKNN0.340.030.40
classifyKNNsc0.500.040.53
classifyLDA1.610.011.63
classifyLDAsc2.850.052.92
classifySVM0.790.010.83
classifySVMsc1.320.001.32
coerce-methods0.240.000.24
compCorr000
createMaigesRaw0.420.000.42
deGenes2by2BootT0.920.040.95
deGenes2by2Ttest0.390.000.64
deGenes2by2Wilcox0.360.000.41
deGenesANOVA0.370.000.38
designANOVA0.130.040.17
dim-methods0.090.000.09
getLabels0.110.000.11
hierM2.550.082.64
hierMde0.660.020.67
image-methods4.220.044.27
kmeansM2.640.082.73
kmeansMde0.510.020.53
loadData000
normLoc3.010.013.03
normOLIN0.100.000.09
normRepLoess0.080.020.10
normScaleLimma77.06 3.5680.68
normScaleMarray48.47 1.6750.19
plot-methods11.38 0.1111.62
plotGenePair0.140.020.16
print-methods0.200.010.22
relNet2TGF0.190.070.36
relNetworkB3.450.043.50
relNetworkM0.140.000.14
robustCorr000
selSpots0.500.050.55
show-methods0.210.000.20
somM3.010.003.01
somMde0.690.010.71
summarizeReplicates3.580.043.61
summary-methods0.20.00.2
tableClass1.310.011.32
tablesDE3.110.053.21