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Package 167/389HostnameOS / ArchBUILDCHECKBUILD BIN
girafe 1.0.0
J. Toedling
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/girafe
Last Changed Rev: 46401 / Revision: 49923
Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010)
wilson1 Linux (openSUSE 11.1) / x86_64 [ OK ] OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: girafe
Version: 1.0.0
Command: /home/biocbuild/bbs-2.6-bioc/R/bin/R CMD build girafe
StartedAt: 2010-10-04 15:21:36 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 15:22:26 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 50.4 seconds
RetCode: 0
Status:  OK 
PackageFile: girafe_1.0.0.tar.gz
PackageFileSize: 1.189 MiB

Command output

* checking for file 'girafe/DESCRIPTION' ... OK
* preparing 'girafe':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* installing *source* package 'girafe' ...
** libs
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c coverage.cpp -o coverage.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c girafe_init.c -o girafe_init.o
g++ -shared -L/usr/local/lib64 -o girafe.so coverage.o girafe_init.o -L/home/biocbuild/bbs-2.6-bioc/R/lib -lR
installing to /tmp/Rinst2001587048/girafe/libs
** R
** inst
** preparing package for lazy loading

Attaching package: 'IRanges'

The following object(s) are masked from 'package:base':

    Map, cbind, mapply, order, paste, pmax, pmax.int, pmin, pmin.int,
    rbind, rep.int, table

Loading required package: GenomicRanges
Loading required package: Biostrings
Loading required package: lattice
Loading required package: Rsamtools

Attaching package: 'intervals'

The following object(s) are masked from 'package:Biostrings':

    type

The following object(s) are masked from 'package:IRanges':

    reduce

Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.


Attaching package: 'Biobase'

The following object(s) are masked from 'package:IRanges':

    updateObject


Attaching package: 'genomeIntervals'

The following object(s) are masked from 'package:GenomicRanges':

    strand, strand<-

Creating a new generic function for "plot" in "girafe"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (girafe)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'girafe_1.0.0.tar.gz'