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Package 155/389HostnameOS / ArchBUILDCHECKBUILD BIN
genoCN 1.0.0
Wei Sun
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/genoCN
Last Changed Rev: 46401 / Revision: 49923
Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]

Summary

Package: genoCN
Version: 1.0.0
Command: /Users/biocbuild/BBS/utils/build-universal.sh genoCN_1.0.0.tar.gz /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R genoCN.buildbin-libdir
StartedAt: 2010-10-04 19:19:49 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 19:19:58 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 8.8 seconds
RetCode: 0
Status:  OK 
PackageFile: genoCN_1.0.0.tgz
PackageFileSize: 1.115 MiB

Command output

                INSTALLATION WITH 'R CMD INSTALL --preclean --library=genoCN.buildbin-libdir genoCN_1.0.0.tar.gz'

* installing *source* package ‘genoCN’ ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c tnorm_mle.c -o tnorm_mle.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c utility.c -o utility.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c xCNV.c -o xCNV.o
xCNV.c: In function ‘emiss’:
xCNV.c:317: warning: unused variable ‘k’
xCNV.c:317: warning: unused variable ‘K’
xCNV.c: In function ‘baum_welch’:
xCNV.c:787: warning: unused variable ‘sd_b_tmp’
xCNV.c:787: warning: unused variable ‘mu_b_tmp’
xCNV.c:769: warning: ‘pbf’ may be used uninitialized in this function
xCNV.c:768: warning: ‘nGtp’ may be used uninitialized in this function
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o genoCN.so tnorm_mle.o utility.o xCNV.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.6-bioc/meat/genoCN.buildbin-libdir/genoCN/libs/i386
*** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c tnorm_mle.c -o tnorm_mle.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c utility.c -o utility.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c xCNV.c -o xCNV.o
xCNV.c: In function ‘emiss’:
xCNV.c:317: warning: unused variable ‘k’
xCNV.c:317: warning: unused variable ‘K’
xCNV.c: In function ‘baum_welch’:
xCNV.c:787: warning: unused variable ‘sd_b_tmp’
xCNV.c:787: warning: unused variable ‘mu_b_tmp’
xCNV.c:769: warning: ‘pbf’ may be used uninitialized in this function
xCNV.c:768: warning: ‘nGtp’ may be used uninitialized in this function
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o genoCN.so tnorm_mle.o utility.o xCNV.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.6-bioc/meat/genoCN.buildbin-libdir/genoCN/libs/ppc
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c tnorm_mle.c -o tnorm_mle.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c utility.c -o utility.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c xCNV.c -o xCNV.o
xCNV.c: In function ‘emiss’:
xCNV.c:317: warning: unused variable ‘k’
xCNV.c:317: warning: unused variable ‘K’
xCNV.c: In function ‘baum_welch’:
xCNV.c:787: warning: unused variable ‘sd_b_tmp’
xCNV.c:787: warning: unused variable ‘mu_b_tmp’
xCNV.c:769: warning: ‘pbf’ may be used uninitialized in this function
xCNV.c:768: warning: ‘nGtp’ may be used uninitialized in this function
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o genoCN.so tnorm_mle.o utility.o xCNV.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.6-bioc/meat/genoCN.buildbin-libdir/genoCN/libs/x86_64
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (genoCN)