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Package 128/389HostnameOS / ArchBUILDCHECKBUILD BIN
flowQ 1.8.0
F. Hahne
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/flowQ
Last Changed Rev: 46401 / Revision: 49923
Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  ERROR  skipped  skipped 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: flowQ
Version: 1.8.0
Command: /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R CMD check --no-vignettes --timings flowQ_1.8.0.tar.gz
StartedAt: 2010-10-04 16:56:13 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 16:59:53 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 219.5 seconds
RetCode: 0
Status:  OK 
CheckDir: flowQ.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.6-bioc/meat/flowQ.Rcheck'
* using R version 2.11.1 Patched (2010-05-31 r52167)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'flowQ/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowQ' version '1.8.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'flowQ' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
evaluateProcess: multiple local function definitions for ‘efun’ with
  different formal arguments
normalizeSets : <anonymous>: no visible global function definition for
  ‘warpSet’
qaProcess.2DStatsPlot: no visible binding for global variable ‘Aliquot’
qaProcess.DensityPlot: no visible binding for global variable ‘Aliquot’
qaProcess.ECDFPlot: no visible binding for global variable ‘Aliquot’
* checking Rd files ... NOTE
prepare_Rd: normalizeSets.Rd:44-51: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

flowQ.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package ‘flowQ’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: flowCore
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)

Attaching package: 'flowCore'

The following object(s) are masked from 'package:stats':

    alias, filter

KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Loading required package: KernSmooth
Loading required package: tools

Attaching package: 'latticeExtra'

The following object(s) are masked from 'package:flowViz':

    ecdfplot

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Using ImageMagic library at /usr/local/lib/ImageMagick-6.3.3
(version 6.3.3)

* DONE (flowQ)

flowQ.Rcheck/flowQ-Ex.timings:

nameusersystemelapsed
aggregatorList-class0.0130.0000.013
binaryAggregator-class0.0010.0000.001
discreteAggregator-class0.0010.0000.001
evaluateProcess0.0000.0000.001
factorAggregator-class0.0020.0000.002
flowQ-package0.0010.0000.000
numericAggregator-class0.0020.0000.002
outlier-class000
outlierResult-class000
qaAggregator-class0.0020.0000.002
qaGraph-class0.0020.0010.002
qaGraphList-class0.0020.0000.002
qaProcess-class0.0010.0010.002
qaProcess.2DStatsPlot15.423 2.50619.883
qaProcess.BoundaryPlot 7.198 1.25610.784
qaProcess.DensityPlot15.768 2.16119.191
qaProcess.ECDFPlot16.110 2.23718.944
qaProcess.KLDistPlot12.251 1.94414.752
qaProcess.cellnumber0.0010.0000.001
qaProcess.marginevents0.0000.0000.001
qaProcess.timeflow0.0000.0000.001
qaProcess.timeline0.0010.0010.001
qaProcessFrame-class0.0020.0010.002
qaReport0.0000.0000.001
rangeAggregator-class0.0020.0010.003
stringAggregator-class0.0010.0000.002
txtFormatQAObject4.2311.2335.647
writeQAReport0.0000.0000.001
writeQATextReport0.0000.0010.000