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Package 114/389HostnameOS / ArchBUILDCHECKBUILD BIN
exonmap 2.6.1
Crispin Miller
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/exonmap
Last Changed Rev: 48370 / Revision: 49923
Last Changed Date: 2010-07-23 05:24:34 -0700 (Fri, 23 Jul 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64 N O T   S U P P O R T E D
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: exonmap
Version: 2.6.1
Command: /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R CMD check --no-vignettes --timings exonmap_2.6.1.tar.gz
StartedAt: 2010-10-04 16:48:30 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 16:49:46 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 75.2 seconds
RetCode: 0
Status:  OK 
CheckDir: exonmap.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.6-bioc/meat/exonmap.Rcheck'
* using R version 2.11.1 Patched (2010-05-31 r52167)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'exonmap/DESCRIPTION' ... OK
* this is package 'exonmap' version '2.6.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'exonmap' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

exonmap.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package ‘exonmap’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (exonmap)

exonmap.Rcheck/exonmap-Ex.timings:

nameusersystemelapsed
PC-class000
array.subset000
db.local.info0.0010.0000.001
details0.0020.0000.002
filters0.0080.0000.010
gene.graph0.0000.0000.001
gene.legend0.0020.0000.001
gene.strip0.0070.0000.009
group.indices0.0010.0000.000
mappings0.0020.0010.003
pc0.0000.0000.001
plotGene0.0030.0000.003
probes.in.range0.0010.0000.002
probeset.stats0.0010.0000.001
read.exon000
si0.0010.0000.001
xmapConnect0.0000.0000.001
xmapGene0.0000.0000.001