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Package 91/389HostnameOS / ArchBUILDCHECKBUILD BIN
crlmm 1.6.6
Benilton S Carvalho , Robert Scharpf , Matt Ritchie
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/crlmm
Last Changed Rev: 49659 / Revision: 49923
Last Changed Date: 2010-09-27 18:36:19 -0700 (Mon, 27 Sep 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: crlmm
Version: 1.6.6
Command: chmod a+r crlmm -R && E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD build crlmm
StartedAt: 2010-10-04 15:12:26 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 15:15:01 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 155.1 seconds
RetCode: 0
Status:  OK  
PackageFile: crlmm_1.6.6.tar.gz
PackageFileSize: 3.702 MiB

Command output

* checking for file 'crlmm/DESCRIPTION' ... OK
* preparing 'crlmm':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* installing *source* package 'crlmm' ...
** libs
  making DLL ...
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O3 -Wall  -std=gnu99 -c gtypeCaller.c -o gtypeCaller.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O3 -Wall  -std=gnu99 -c init.c -o init.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O3 -Wall  -std=gnu99 -c trimmed.c -o trimmed.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O3 -Wall  -std=gnu99 -c utils.c -o utils.o
utils.c: In function 'mad_median':
utils.c:124: warning: unused variable 'n_ignore'
gcc -shared -s -static-libgcc -o crlmm.dll tmp.def gtypeCaller.o init.o trimmed.o utils.o -LE:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to E:/biocbld/bbs-2.6-bioc/tmpdir/Rinst596083248/crlmm/libs
  ... done
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

================================================================================
Welcome to oligoClasses version 1.10.0
================================================================================
Large dataset support for 'oligo/crlmm': Disabled
     - Load 'ff'
================================================================================
Parallel computing support for 'oligo/crlmm': Disabled
     - Load 'ff'
     - Load 'snow'
     - Use options(cluster=makeCluster(...))
================================================================================
Loading package bit1.1-6

package:bit (c) 2008/2009 Jens Oehlschlaegel (GPL-2)

creators: bit bitwhich

coercion: as.logical as.integer as.bit as.bitwhich which

operator: ! & | xor != == 

querying: print length any all min max range sum summary

bit access: length<- [ [<- [[ [[<-

for more help type ?bit

Loading package ff2.2-0

- getOption("fftempdir")=="E:/biocbld/bbs-2.6-bioc/tmpdir/Rtmplemu9f"

- getOption("ffextension")=="ff"

- getOption("ffdrop")==TRUE

- getOption("fffinonexit")==TRUE

- getOption("ffpagesize")==65536

- getOption("ffcaching")=="mmnoflush"  -- consider "ffeachflush" if your system stalls on large writes

- getOption("ffbatchbytes")==16095641.6 -- consider a different value for tuning your system

- getOption("ffmaxbytes")==804782080 -- consider a different value for tuning your system

Creating a new generic function for "ellipse" in "crlmm"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Welcome to crlmm version 1.6.6

* DONE (crlmm)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'crlmm_1.6.6.tar.gz'