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Package 65/389HostnameOS / ArchBUILDCHECKBUILD BIN
cellHTS2 2.12.0
Florian Hahne
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/cellHTS2
Last Changed Rev: 46401 / Revision: 49923
Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: cellHTS2
Version: 2.12.0
Command: /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R CMD check --no-vignettes --timings cellHTS2_2.12.0.tar.gz
StartedAt: 2010-10-04 16:18:24 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 16:24:08 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 343.9 seconds
RetCode: 0
Status:  OK 
CheckDir: cellHTS2.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.6-bioc/meat/cellHTS2.Rcheck'
* using R version 2.11.1 Patched (2010-05-31 r52167)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'cellHTS2/DESCRIPTION' ... OK
* this is package 'cellHTS2' version '2.12.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'cellHTS2' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking tests ...
  Running ‘test.R’
 OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

cellHTS2.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package ‘cellHTS2’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: akima
Loading required package: lattice
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)
Creating a new generic function for "lines" in "cellHTS2"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (cellHTS2)

cellHTS2.Rcheck/cellHTS2-Ex.timings:

nameusersystemelapsed
Bscore3.5510.0314.352
ROC-class0.5750.0090.776
ROC2.2810.0122.860
annotate1.7180.0122.373
bdgpbiomart0.2770.0060.326
cellHTS-class1.6820.0241.852
configurationAsScreenPlot0.8300.0221.220
configure1.4530.0151.721
convertOldCellHTS2.0490.0072.809
convertWellCoordinates0.0010.0000.002
data-KcViab0.1890.0050.271
data-KcViabSmall0.0140.0010.014
data-dualCh0.0150.0020.043
data-oldKcViabSmall0.0140.0010.022
getDynamicRange1.1690.0101.384
getEnVisionRawData0.0960.0030.137
getMeasureRepAgreement1.1030.0081.565
getTopTable2.3180.0132.434
getZfactor0.7700.0050.859
imageScreen1.9790.0102.331
normalizePlates3.0150.0143.968
oneRowPerId0.0060.0010.007
plotSpatialEffects2.3890.0113.029
readHTAnalystData2.2520.0103.080
readPlateList1.6310.0132.136
scoreReplicates2.1150.0102.282
scores2calls1.9450.0082.089
setSettings0.0120.0050.016
spatialNormalization2.5390.0373.314
summarizeChannels3.2570.0194.077
summarizeReplicates1.9110.0092.333
templateDescriptionFile0.0040.0010.012
updateCellHTS0.0320.0020.055
write.tabdel0.0330.0020.036
writeReport0.0130.0020.014
writeTab0.0250.0020.030