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Package 38/389HostnameOS / ArchBUILDCHECKBUILD BIN
beadarray 1.16.0
Mark Dunning
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/beadarray
Last Changed Rev: 46401 / Revision: 49923
Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]

Summary

Package: beadarray
Version: 1.16.0
Command: /Users/biocbuild/BBS/utils/build-universal.sh beadarray_1.16.0.tar.gz /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R beadarray.buildbin-libdir
StartedAt: 2010-10-04 19:12:58 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 19:13:18 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 19.8 seconds
RetCode: 0
Status:  OK 
PackageFile: beadarray_1.16.0.tgz
PackageFileSize: 10.03 MiB

Command output

                INSTALLATION WITH 'R CMD INSTALL --preclean --library=beadarray.buildbin-libdir beadarray_1.16.0.tar.gz'

* installing *source* package ‘beadarray’ ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c BASH.c -o BASH.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c BLImagePlot.c -o BLImagePlot.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c HULK.c -o HULK.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c createBeadSummaryData.c -o createBeadSummaryData.o
createBeadSummaryData.c: In function ‘findAllOutliers’:
createBeadSummaryData.c:223: warning: ‘status’ may be used uninitialized in this function
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c findProbeIndices.c -o findProbeIndices.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c readBeadImages.c -o readBeadImages.o
readBeadImages.c: In function ‘getPixelIntensities’:
readBeadImages.c:368: warning: unused variable ‘result’
readBeadImages.c: In function ‘calculateBackground’:
readBeadImages.c:493: warning: unused variable ‘temp’
readBeadImages.c:491: warning: unused variable ‘cY’
readBeadImages.c:491: warning: unused variable ‘cX’
readBeadImages.c:490: warning: unused variable ‘opt4’
readBeadImages.c:490: warning: unused variable ‘opt3’
readBeadImages.c:490: warning: unused variable ‘opt2’
readBeadImages.c:490: warning: unused variable ‘opt1’
readBeadImages.c:490: warning: unused variable ‘yc’
readBeadImages.c:490: warning: unused variable ‘xc’
readBeadImages.c:489: warning: unused variable ‘dist’
readBeadImages.c: In function ‘readBeadImage’:
readBeadImages.c:626: warning: ‘offset’ may be used uninitialized in this function
readBeadImages.c:626: warning: ‘records’ may be used uninitialized in this function
readBeadImages.c:625: warning: ‘StripOffset’ may be used uninitialized in this function
readBeadImages.c:625: warning: ‘ImageHeight’ may be used uninitialized in this function
readBeadImages.c:625: warning: ‘ImageWidth’ may be used uninitialized in this function
readBeadImages.c:625: warning: ‘BeginData’ may be used uninitialized in this function
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o beadarray.so BASH.o BLImagePlot.o HULK.o createBeadSummaryData.o findProbeIndices.o readBeadImages.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.6-bioc/meat/beadarray.buildbin-libdir/beadarray/libs/i386
*** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c BASH.c -o BASH.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c BLImagePlot.c -o BLImagePlot.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c HULK.c -o HULK.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c createBeadSummaryData.c -o createBeadSummaryData.o
createBeadSummaryData.c: In function ‘findAllOutliers’:
createBeadSummaryData.c:223: warning: ‘status’ may be used uninitialized in this function
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c findProbeIndices.c -o findProbeIndices.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c readBeadImages.c -o readBeadImages.o
readBeadImages.c: In function ‘getPixelIntensities’:
readBeadImages.c:368: warning: unused variable ‘result’
readBeadImages.c: In function ‘calculateBackground’:
readBeadImages.c:493: warning: unused variable ‘temp’
readBeadImages.c:491: warning: unused variable ‘cY’
readBeadImages.c:491: warning: unused variable ‘cX’
readBeadImages.c:490: warning: unused variable ‘opt4’
readBeadImages.c:490: warning: unused variable ‘opt3’
readBeadImages.c:490: warning: unused variable ‘opt2’
readBeadImages.c:490: warning: unused variable ‘opt1’
readBeadImages.c:490: warning: unused variable ‘yc’
readBeadImages.c:490: warning: unused variable ‘xc’
readBeadImages.c:489: warning: unused variable ‘dist’
readBeadImages.c: In function ‘readBeadImage’:
readBeadImages.c:626: warning: ‘offset’ may be used uninitialized in this function
readBeadImages.c:626: warning: ‘records’ may be used uninitialized in this function
readBeadImages.c:625: warning: ‘StripOffset’ may be used uninitialized in this function
readBeadImages.c:625: warning: ‘ImageHeight’ may be used uninitialized in this function
readBeadImages.c:625: warning: ‘ImageWidth’ may be used uninitialized in this function
readBeadImages.c:625: warning: ‘BeginData’ may be used uninitialized in this function
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o beadarray.so BASH.o BLImagePlot.o HULK.o createBeadSummaryData.o findProbeIndices.o readBeadImages.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.6-bioc/meat/beadarray.buildbin-libdir/beadarray/libs/ppc
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c BASH.c -o BASH.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c BLImagePlot.c -o BLImagePlot.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c HULK.c -o HULK.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c createBeadSummaryData.c -o createBeadSummaryData.o
createBeadSummaryData.c: In function ‘findAllOutliers’:
createBeadSummaryData.c:223: warning: ‘status’ may be used uninitialized in this function
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c findProbeIndices.c -o findProbeIndices.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c readBeadImages.c -o readBeadImages.o
readBeadImages.c: In function ‘getPixelIntensities’:
readBeadImages.c:368: warning: unused variable ‘result’
readBeadImages.c: In function ‘calculateBackground’:
readBeadImages.c:493: warning: unused variable ‘temp’
readBeadImages.c:491: warning: unused variable ‘cY’
readBeadImages.c:491: warning: unused variable ‘cX’
readBeadImages.c:490: warning: unused variable ‘opt4’
readBeadImages.c:490: warning: unused variable ‘opt3’
readBeadImages.c:490: warning: unused variable ‘opt2’
readBeadImages.c:490: warning: unused variable ‘opt1’
readBeadImages.c:490: warning: unused variable ‘yc’
readBeadImages.c:490: warning: unused variable ‘xc’
readBeadImages.c:489: warning: unused variable ‘dist’
readBeadImages.c: In function ‘readBeadImage’:
readBeadImages.c:626: warning: ‘offset’ may be used uninitialized in this function
readBeadImages.c:626: warning: ‘records’ may be used uninitialized in this function
readBeadImages.c:625: warning: ‘StripOffset’ may be used uninitialized in this function
readBeadImages.c:625: warning: ‘ImageHeight’ may be used uninitialized in this function
readBeadImages.c:625: warning: ‘ImageWidth’ may be used uninitialized in this function
readBeadImages.c:625: warning: ‘BeginData’ may be used uninitialized in this function
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o beadarray.so BASH.o BLImagePlot.o HULK.o createBeadSummaryData.o findProbeIndices.o readBeadImages.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.6-bioc/meat/beadarray.buildbin-libdir/beadarray/libs/x86_64
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (beadarray)