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Package 12/389HostnameOS / ArchBUILDCHECKBUILD BIN
affyILM 1.0.0
Myriam Kroll and Fabrice Berger
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/affyILM
Last Changed Rev: 47184 / Revision: 49923
Last Changed Date: 2010-05-27 17:19:41 -0700 (Thu, 27 May 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: affyILM
Version: 1.0.0
Command: E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings affyILM_1.0.0.tar.gz
StartedAt: 2010-10-04 16:32:08 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 16:34:19 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 131.1 seconds
RetCode: 0
Status:  OK  
CheckDir: affyILM.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.6-bioc/meat/affyILM.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'affyILM/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'affyILM' version '1.0.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'affyILM' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

affyILM.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'affyILM' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
  making DLL ...
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"      -IE:/biocbld/bbs-2.6-bioc/R/src/include -IC:/gsl/include   -O3 -Wall  -std=gnu99 -c affyilm.c -o affyilm.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"      -IE:/biocbld/bbs-2.6-bioc/R/src/include -IC:/gsl/include   -O3 -Wall  -std=gnu99 -c enval.c -o enval.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"      -IE:/biocbld/bbs-2.6-bioc/R/src/include -IC:/gsl/include   -O3 -Wall  -std=gnu99 -c get_backg.c -o get_backg.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"      -IE:/biocbld/bbs-2.6-bioc/R/src/include -IC:/gsl/include   -O3 -Wall  -std=gnu99 -c init.c -o init.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"      -IE:/biocbld/bbs-2.6-bioc/R/src/include -IC:/gsl/include   -O3 -Wall  -std=gnu99 -c multAB.c -o multAB.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"      -IE:/biocbld/bbs-2.6-bioc/R/src/include -IC:/gsl/include   -O3 -Wall  -std=gnu99 -c multXty.c -o multXty.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"      -IE:/biocbld/bbs-2.6-bioc/R/src/include -IC:/gsl/include   -O3 -Wall  -std=gnu99 -c points.c -o points.o
gcc -shared -s -static-libgcc -o affyILM.dll tmp.def affyilm.o enval.o get_backg.o init.o multAB.o multXty.o points.o -LC:/gsl/bin -lgsl -lgslcblas -lm -LE:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to E:/biocbld/bbs-2.6-bioc/meat/affyILM.Rcheck/affyILM/libs
  ... done
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (affyILM)

affyILM.Rcheck/affyILM-Ex.timings:

nameusersystemelapsed
ILM-class000
ilm-methods 9.86 1.1617.20
ilm10.70 0.1010.91
plotIntens6.700.076.86