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Package 140/389HostnameOS / ArchBUILDCHECKBUILD BIN
GeneAnswers 1.4.2
Gang Feng and Pan Du
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/GeneAnswers
Last Changed Rev: 46955 / Revision: 49923
Last Changed Date: 2010-05-18 12:41:18 -0700 (Tue, 18 May 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: GeneAnswers
Version: 1.4.2
Command: /home/biocbuild/bbs-2.6-bioc/R/bin/R CMD check --no-vignettes --timings GeneAnswers_1.4.2.tar.gz
StartedAt: 2010-10-04 17:34:24 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 17:40:23 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 358.8 seconds
RetCode: 0
Status:  OK 
CheckDir: GeneAnswers.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.6-bioc/meat/GeneAnswers.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GeneAnswers/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GeneAnswers' version '1.4.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GeneAnswers' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

GeneAnswers.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'GeneAnswers' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: bitops
Loading required package: AnnotationDbi
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (GeneAnswers)

GeneAnswers.Rcheck/GeneAnswers-Ex.timings:

nameusersystemelapsed
DOLite0.0240.0000.021
DOLiteTerm0.0000.0040.003
GeneAnswers-class19.217 0.37620.964
GeneAnswers-package15.905 0.06815.980
buildNet16.357 0.07616.464
categoryNet000
chartPlots0.0800.0160.169
drawTable0.7480.0120.762
geneAnnotationHeatmap000
geneAnswersBuilder16.329 0.14816.474
geneAnswersChartPlots16.725 0.12016.844
geneAnswersConceptNet16.581 0.16416.751
geneAnswersConceptRelation15.865 0.16016.025
geneAnswersConcepts16.797 0.14817.280
geneAnswersHeatmap16.577 0.24817.120
geneAnswersHomoMapping15.745 0.12415.903
geneAnswersReadable29.870 0.18830.224
geneAnswersSort16.709 0.17216.886
geneConceptNet0.0000.0000.001
getCategoryList0.2280.0080.355
getCategoryTerms0.1320.0040.139
getConceptTable0.7320.0200.768
getConnectedGraph16.093 0.20816.309
getDOLiteTerms0.0080.0000.008
getGOList5.6320.1687.394
getHomoGeneIDs0.2050.0080.271
getMultiLayerGraphIDs18.557 0.16818.730
getNextGOIDs0.0760.0000.077
getPATHList0.1080.0040.112
getPATHTerms0.0560.0040.059
getSingleLayerGraphIDs0.0040.0000.002
getSymbols0.0600.0000.061
groupReport6.3640.0566.532
humanExpr0.0080.0000.007
humanGeneInput0.0040.0000.004
mouseExpr0.0040.0000.007
mouseGeneInput0.0040.0000.005
sampleGroupsData0.0400.0280.067
searchEntrez000
topCategory000
topCategoryGenes000
topDOLite000
topDOLiteGenes000
topGO000
topGOGenes000
topPATH000
topPATHGenes0.0000.0040.000