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Package 99/389HostnameOS / ArchBUILDCHECKBUILD BIN
DEGseq 1.2.2
Likun Wang
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/DEGseq
Last Changed Rev: 47091 / Revision: 49923
Last Changed Date: 2010-05-24 08:05:30 -0700 (Mon, 24 May 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: DEGseq
Version: 1.2.2
Command: D:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings DEGseq_1.2.2.tar.gz
StartedAt: 2010-10-04 16:29:56 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 16:32:22 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 146.6 seconds
RetCode: 0
Status:  OK  
CheckDir: DEGseq.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'D:/biocbld/bbs-2.6-bioc/meat/DEGseq.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'DEGseq/DESCRIPTION' ... OK
* this is package 'DEGseq' version '1.2.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'DEGseq' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

DEGseq.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'DEGseq' ...
** libs
  making DLL ...
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -c getGeneExp.cpp -o getGeneExp.o
x86_64-w64-mingw32-g++ -shared -s -static-libgcc -o DEGseq.dll tmp.def getGeneExp.o -LD:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to D:/biocbld/bbs-2.6-bioc/meat/DEGseq.Rcheck/DEGseq/libs/x64
  ... done
** R
** inst
** preparing package for lazy loading
Loading required package: tcltk
Loading Tcl/Tk interface ... done
Loading required package: IRanges

Attaching package: 'IRanges'

The following object(s) are masked from 'package:base':

    Map, cbind, mapply, order, paste, pmax, pmax.int, pmin, pmin.int,
    rbind, rep.int, table

Loading required package: GenomicRanges
Loading required package: Biostrings
Loading required package: lattice
Loading required package: Rsamtools
Loading required package: impute
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (DEGseq)

DEGseq.Rcheck/DEGseq-Ex.timings:

nameusersystemelapsed
DEGexp2.740.082.82
DEGexp26.830.066.91
DEGseq0.650.090.75
DEGseq.aln2.020.812.91
getGeneExp0.280.000.28
getGeneExp.aln0.720.291.00
readGeneExp0.050.000.05
samWrapper5.300.065.36