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Package 120/354HostnameOS / ArchBUILDCHECKBUILD BIN
flowUtils 1.7.0
Nishant Gopalakrishnan
Bioconductor Changelog
Snapshot Date: 2009-12-07 11:32:00 -0800 (Mon, 07 Dec 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/flowUtils
Last Changed Rev: 42686 / Revision: 43434
Last Changed Date: 2009-10-27 16:45:24 -0700 (Tue, 27 Oct 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ WARNINGS ] OK 
Package: flowUtils
Version: 1.7.0
Command: /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R CMD check --no-vignettes flowUtils_1.7.0.tar.gz
StartedAt: 2009-12-07 17:17:51 -0800 (Mon, 07 Dec 2009)
EndedAt: 2009-12-07 17:19:25 -0800 (Mon, 07 Dec 2009)
EllapsedTime: 93.6 seconds
RetCode: 0
Status: WARNINGS
CheckDir: flowUtils.Rcheck
Warnings: 1

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.6-bioc/meat/flowUtils.Rcheck'
* using R version 2.11.0 Under development (unstable) (2009-11-30 r50622)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'flowUtils/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowUtils' version '1.7.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'flowUtils' can be installed ... WARNING
Found the following significant warnings:
  Warning: replacing previous import ‘nodes’ when loading ‘graph’
  Warning: replacing previous import ‘addNode’ when loading ‘XML’
See '/Users/biocbuild/bbs-2.6-bioc/meat/flowUtils.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
translateGate: no visible global function definition for
  ‘xmlPolygonGateNode’
translateGate: no visible global function definition for
  ‘xmlRectangleGateNode’
xmlCompensationEditorWin: no visible global function definition for
  ‘xmlWindowPosition’
xmlEllipsoidGateNode: no visible binding for global variable
  ‘xmlDimensionNode’
xmlEllipsoidGateNode: no visible global function definition for
  ‘xmlFociNode’
xmlEllipsoidGateNode: no visible binding for global variable
  ‘xmlVertexNode’
xmlEllipsoidGateNode: no visible global function definition for
  ‘xmlEdgeNode’
xmlGraphWin: no visible binding for global variable ‘xmlTextTraits’
xmlGraphWin: no visible global function definition for
  ‘xmlWindowPosition’
xmlGroupsWin: no visible global function definition for ‘xmlGraph’
xmlLayoutEditorWin: no visible global function definition for
  ‘xmlWindowPosition’
xmlPolygonGateWin: no visible binding for global variable
  ‘xmlDimensionNode’
xmlPolygonGateWin: no visible binding for global variable
  ‘xmlVertexNode’
xmlRectangleGateWin : <anonymous>: no visible global function
  definition for ‘xmlDimensionNode’
xmlSampleNodeWin: no visible global function definition for
  ‘xmlSubpopulations’
xmlSampleNodeWin: no visible global function definition for ‘xmlGraph’
xmlSubpopulationsHelper: no visible global function definition for
  ‘xmlGraph’
xmlSubpopulationsHelper: no visible global function definition for
  ‘xmlGateNode’
xmlTableEditorWin: no visible global function definition for
  ‘xmlWindowPosition’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  /Users/biocbuild/bbs-2.6-bioc/meat/flowUtils.Rcheck/00check.log
for details

flowUtils.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package ‘flowUtils’ ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
pcaPP 0.1-1 loaded
Scalable Robust Estimators with High Breakdown Point (version 1.0-00)

Attaching package: 'flowCore'


	The following object(s) are masked from package:stats :

	 alias,
	 filter 

Warning: replacing previous import ‘nodes’ when loading ‘graph’
Warning: replacing previous import ‘addNode’ when loading ‘XML’
** help
*** installing help indices
** building package indices ...
* DONE (flowUtils)