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Package 57/354HostnameOS / ArchBUILDCHECKBUILD BIN
BUS 1.0.2
Yuanhua Liu
Bioconductor Changelog
Snapshot Date: 2009-12-07 11:32:00 -0800 (Mon, 07 Dec 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BUS
Last Changed Rev: 42819 / Revision: 43434
Last Changed Date: 2009-11-04 16:42:53 -0800 (Wed, 04 Nov 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  ERROR  skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  ERROR  skipped  skipped 
pitt Mac OS X Tiger (10.4.11) / i386  ERROR  skipped  skipped 
pelham Mac OS X Leopard (10.5.8) / i386 [ ERROR ] skipped  skipped 
Package: BUS
Version: 1.0.2
Command: /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R CMD build BUS
StartedAt: 2009-12-07 15:51:14 -0800 (Mon, 07 Dec 2009)
EndedAt: 2009-12-07 15:51:20 -0800 (Mon, 07 Dec 2009)
EllapsedTime: 6.1 seconds
RetCode: 1
Status: ERROR
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'BUS/DESCRIPTION' ... OK
* preparing 'BUS':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* installing *source* package ‘BUS’ ...
** libs
** arch - i386
g++-4.0 -arch i386 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c BUS.cpp -o BUS.o
g++-4.2 -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BUS.so BUS.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c BUS.cpp -o BUS.o
g++-4.2 -arch ppc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BUS.so BUS.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - x86_64
g++-4.0 -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c BUS.cpp -o BUS.o
g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BUS.so BUS.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
Loading required package: infotheo
** help
Warning: ./man/gene.similarity.Rd:29: unexpected '}'
*** installing help indices
** building package indices ...
* DONE (BUS)
* creating vignettes ... ERROR
Loading required package: minet
Loading required package: infotheo

Error: processing vignette 'bus.rnw' failed with diagnostics:
 chunk 2 (label=association.genes) 
Error in s.similarity(EXP, measure, net.trim) : 
  could not find function "norm"
Execution halted